Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PHA49_RS02840 Genome accession   NZ_CP116234
Coordinates   596044..596595 (+) Length   183 a.a.
NCBI ID   WP_271331034.1    Uniprot ID   -
Organism   Helicobacter pylori strain H390d     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591044..601595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA49_RS02825 (PHA49_02825) cysS 591224..592621 (-) 1398 WP_271331031.1 cysteine--tRNA ligase -
  PHA49_RS02830 (PHA49_02830) murJ 592622..594082 (-) 1461 WP_271331032.1 murein biosynthesis integral membrane protein MurJ -
  PHA49_RS02835 (PHA49_02835) - 594175..596019 (+) 1845 WP_271331033.1 FapA family protein -
  PHA49_RS02840 (PHA49_02840) ruvA 596044..596595 (+) 552 WP_271331034.1 Holliday junction branch migration protein RuvA Machinery gene
  PHA49_RS02845 (PHA49_02845) - 596689..598332 (+) 1644 WP_416361341.1 DUF3519 domain-containing protein -
  PHA49_RS02850 (PHA49_02850) - 598329..598709 (+) 381 WP_271331035.1 hypothetical protein -
  PHA49_RS02855 (PHA49_02855) - 598694..599830 (-) 1137 WP_271331036.1 potassium channel family protein -
  PHA49_RS02860 (PHA49_02860) rpmB 599980..600168 (-) 189 WP_001119000.1 50S ribosomal protein L28 -
  PHA49_RS02865 (PHA49_02865) - 600268..601110 (-) 843 WP_271331037.1 HpaA family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20286.90 Da        Isoelectric Point: 9.4316

>NTDB_id=709217 PHA49_RS02840 WP_271331034.1 596044..596595(+) (ruvA) [Helicobacter pylori strain H390d]
MIVGLIGVVEKISALEVHIEVQGVVYRVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLHS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=709217 PHA49_RS02840 WP_271331034.1 596044..596595(+) (ruvA) [Helicobacter pylori strain H390d]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATAG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACCAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-182)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361