Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XCCCN05v2_RS04760 Genome accession   NZ_CP101170
Coordinates   1135156..1136214 (+) Length   352 a.a.
NCBI ID   WP_336885835.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain CN05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130156..1141214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCCCN05v2_RS04750 - 1131437..1132087 (-) 651 WP_012437499.1 hypothetical protein -
  XCCCN05v2_RS04755 - 1132514..1134940 (-) 2427 WP_237349741.1 penicillin-binding protein 1A -
  XCCCN05v2_RS04760 comM 1135156..1136214 (+) 1059 WP_336885835.1 pilus assembly protein PilM Machinery gene
  XCCCN05v2_RS04765 - 1136214..1136993 (+) 780 WP_237349743.1 PilN domain-containing protein -
  XCCCN05v2_RS04770 - 1136990..1137655 (+) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  XCCCN05v2_RS04775 - 1137652..1138185 (+) 534 WP_011038332.1 pilus assembly protein PilP -
  XCCCN05v2_RS04780 - 1138205..1140151 (+) 1947 WP_237349744.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37638.27 Da        Isoelectric Point: 4.3924

>NTDB_id=709092 XCCCN05v2_RS04760 WP_336885835.1 1135156..1136214(+) (comM) [Xanthomonas campestris pv. campestris strain CN05]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVMEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=709092 XCCCN05v2_RS04760 WP_336885835.1 1135156..1136214(+) (comM) [Xanthomonas campestris pv. campestris strain CN05]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGTTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCAGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCGCGTTCGGAAAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAGAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
CGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGTTGAGCGTGCTGCGCTCAGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTAATGCGCCGCTACGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGATGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAGTTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.009

99.716

0.469