Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6J61_RS03865 Genome accession   NZ_AP018769
Coordinates   764792..765298 (-) Length   168 a.a.
NCBI ID   WP_048942365.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-6 isolate 12H01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 759792..770298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J61_RS03830 (CHBNII6_07250) raiA 760044..760367 (-) 324 WP_005648863.1 ribosome-associated translation inhibitor RaiA -
  K6J61_RS03835 (CHBNII6_07260) bamC 760540..761187 (-) 648 WP_048942369.1 outer membrane protein assembly factor BamC -
  K6J61_RS03840 (CHBNII6_07270) dapA 761298..762194 (-) 897 WP_048942368.1 4-hydroxy-tetrahydrodipicolinate synthase -
  K6J61_RS03845 (CHBNII6_07280) bcp 762295..762762 (+) 468 WP_110459472.1 thioredoxin-dependent thiol peroxidase -
  K6J61_RS03850 (CHBNII6_07290) exbB 762905..763357 (+) 453 WP_005656185.1 TonB-system energizer ExbB -
  K6J61_RS03855 (CHBNII6_07300) exbD 763361..763804 (+) 444 WP_005656183.1 TonB system transport protein ExbD -
  K6J61_RS03860 (CHBNII6_07310) - 763814..764614 (+) 801 WP_048942366.1 energy transducer TonB -
  K6J61_RS03865 (CHBNII6_07320) ssb 764792..765298 (-) 507 WP_048942365.1 single-stranded DNA-binding protein Machinery gene
  K6J61_RS03870 (CHBNII6_07330) uvrA 765451..768282 (+) 2832 WP_048942363.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18897.67 Da        Isoelectric Point: 5.0028

>NTDB_id=70906 K6J61_RS03865 WP_048942365.1 764792..765298(-) (ssb) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNADGYGNEMGSSPQPSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=70906 K6J61_RS03865 WP_048942365.1 764792..765298(-) (ssb) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGTAAAGGTTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGATGGTTATGGTAATGAGATGGGATCTTCACCACAACCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

58.101

100

0.619
  ssb Neisseria meningitidis MC58

49.133

100

0.506
  ssb Neisseria gonorrhoeae MS11

49.133

100

0.506

Multiple sequence alignment