Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NL113_RS13105 Genome accession   NZ_CP101130
Coordinates   2668290..2669636 (+) Length   448 a.a.
NCBI ID   WP_006639265.1    Uniprot ID   M5NZS0
Organism   Bacillus sp. KRF7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2663290..2674636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS13085 - 2664347..2664985 (-) 639 WP_006639268.1 YigZ family protein -
  NL113_RS13090 degS 2665207..2666364 (+) 1158 WP_006639267.1 histidine kinase Regulator
  NL113_RS13095 degU 2666446..2667135 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  NL113_RS13100 - 2667255..2668097 (+) 843 WP_006639266.1 DegV family protein -
  NL113_RS13105 comFA 2668290..2669636 (+) 1347 WP_006639265.1 DEAD/DEAH box helicase Machinery gene
  NL113_RS13110 - 2669693..2669977 (+) 285 WP_006639264.1 late competence development ComFB family protein -
  NL113_RS13115 comFC 2669934..2670668 (+) 735 WP_006639263.1 ComF family protein Machinery gene
  NL113_RS13120 - 2670726..2671145 (+) 420 WP_006639262.1 TIGR03826 family flagellar region protein -
  NL113_RS13125 flgM 2671225..2671488 (+) 264 WP_006639261.1 flagellar biosynthesis anti-sigma factor FlgM -
  NL113_RS13130 - 2671503..2671985 (+) 483 WP_029419581.1 flagellar protein FlgN -
  NL113_RS13135 flgK 2672003..2673526 (+) 1524 WP_006639259.1 flagellar hook-associated protein FlgK -
  NL113_RS13140 flgL 2673537..2674448 (+) 912 WP_006639258.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50591.30 Da        Isoelectric Point: 10.0116

>NTDB_id=708966 NL113_RS13105 WP_006639265.1 2668290..2669636(+) (comFA) [Bacillus sp. KRF7]
MLESRHLLKSELPFPDHVIEWHIQKGLIKTEKPIAKTAKGFICKRCGQDQQTFFAKYPCFICDKTCVYCRSCVMMGRVSE
CTPLLTWKDADLPKWPAVRMEWRGVLSEGQEKAASSIVEAIRKKEELLIWAVCGAGKTEILFQGIEFALTKGLRVCIATP
RTDVVLELAPRLKNAIKGVEIAALYGGSPDRGMLSPLMISTTHQLLRYKEAFDVIIVDEVDAFPYCLDKKLQYAVKKAGK
QQCTRIYLTATPSREMKRHVGSGRLKAVQIPARYHRSPLPEPEFAWCGNWKKRLERKNIPSAVKNWLFKHKELDQPVFLF
VPSIQTLQSAVRLLKKEHFNTAGVHADDPDRNEKVKQFRSGAFDILVTTTILERGVTVKKAQVGVLGAESAVFTESALVQ
ISGRAGRHPQFPTGAVCFFHFGKTVNMIAARRHIQQMNKMAKLENLID

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=708966 NL113_RS13105 WP_006639265.1 2668290..2669636(+) (comFA) [Bacillus sp. KRF7]
ATGCTTGAGTCCCGCCACCTTCTCAAAAGCGAGTTGCCTTTTCCCGATCATGTGATTGAATGGCATATCCAAAAAGGTTT
GATAAAAACTGAAAAACCGATTGCAAAAACGGCAAAAGGCTTTATTTGCAAACGATGCGGACAGGATCAGCAGACGTTTT
TTGCTAAATACCCTTGTTTTATTTGTGATAAAACCTGCGTTTACTGCCGTTCATGCGTGATGATGGGGAGAGTAAGCGAA
TGTACGCCGCTCTTAACTTGGAAAGACGCTGACCTGCCCAAATGGCCGGCTGTCCGGATGGAGTGGAGAGGCGTTCTTTC
CGAGGGGCAGGAAAAAGCGGCAAGCTCGATTGTTGAAGCCATCCGCAAAAAAGAAGAGCTGTTAATTTGGGCGGTTTGCG
GTGCCGGTAAAACAGAGATTCTTTTTCAGGGAATAGAATTTGCTTTGACTAAAGGCTTGAGAGTATGTATAGCCACTCCG
AGAACAGATGTTGTTCTTGAGCTTGCCCCGAGATTAAAGAACGCTATTAAAGGAGTAGAAATTGCCGCTTTATACGGAGG
GAGTCCAGACAGGGGGATGCTCTCGCCTCTCATGATTTCTACCACCCACCAGCTTCTGCGCTACAAAGAAGCGTTCGATG
TGATCATTGTTGATGAGGTTGATGCATTTCCATATTGTTTGGATAAAAAGCTGCAATACGCCGTGAAAAAAGCGGGAAAG
CAGCAATGCACCCGAATATATTTAACGGCTACACCTTCACGGGAAATGAAACGGCATGTTGGATCCGGGAGGCTTAAGGC
CGTTCAGATTCCGGCAAGGTATCACAGAAGTCCATTGCCAGAACCGGAATTTGCATGGTGCGGCAACTGGAAAAAGAGAC
TTGAACGAAAAAACATTCCCTCCGCCGTGAAAAATTGGCTTTTCAAGCATAAAGAACTGGATCAGCCTGTCTTTTTATTT
GTGCCCTCGATTCAGACGCTTCAATCTGCGGTCAGGCTGTTGAAAAAGGAACATTTCAATACAGCGGGCGTACATGCGGA
TGACCCGGATAGAAATGAAAAGGTAAAGCAGTTTAGAAGCGGAGCGTTTGATATTCTCGTCACAACAACCATATTGGAAC
GGGGGGTAACGGTCAAAAAAGCCCAGGTCGGAGTGCTCGGTGCGGAGTCAGCCGTTTTTACAGAAAGCGCTCTTGTTCAA
ATATCGGGAAGAGCGGGGAGGCATCCGCAGTTTCCGACCGGAGCCGTTTGTTTTTTTCATTTCGGCAAGACGGTCAATAT
GATAGCCGCCCGCCGTCATATTCAACAAATGAATAAAATGGCTAAACTGGAAAATTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(106-254)

Helicase conserved C-terminal domain (Helicase_C)

(303-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5NZS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.136

98.214

0.6
  comFA/cflA Streptococcus mitis SK321

37.9

97.768

0.371