Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NL113_RS13095 Genome accession   NZ_CP101130
Coordinates   2666446..2667135 (+) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus sp. KRF7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2661446..2672135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS13075 - 2662044..2663108 (+) 1065 WP_006639270.1 glycosyltransferase family 4 protein -
  NL113_RS13080 - 2663251..2664330 (-) 1080 WP_006639269.1 LCP family protein -
  NL113_RS13085 - 2664347..2664985 (-) 639 WP_006639268.1 YigZ family protein -
  NL113_RS13090 degS 2665207..2666364 (+) 1158 WP_006639267.1 histidine kinase Regulator
  NL113_RS13095 degU 2666446..2667135 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  NL113_RS13100 - 2667255..2668097 (+) 843 WP_006639266.1 DegV family protein -
  NL113_RS13105 comFA 2668290..2669636 (+) 1347 WP_006639265.1 DEAD/DEAH box helicase Machinery gene
  NL113_RS13110 - 2669693..2669977 (+) 285 WP_006639264.1 late competence development ComFB family protein -
  NL113_RS13115 comFC 2669934..2670668 (+) 735 WP_006639263.1 ComF family protein Machinery gene
  NL113_RS13120 - 2670726..2671145 (+) 420 WP_006639262.1 TIGR03826 family flagellar region protein -
  NL113_RS13125 flgM 2671225..2671488 (+) 264 WP_006639261.1 flagellar biosynthesis anti-sigma factor FlgM -
  NL113_RS13130 - 2671503..2671985 (+) 483 WP_029419581.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=708965 NL113_RS13095 WP_003185730.1 2666446..2667135(+) (degU) [Bacillus sp. KRF7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=708965 NL113_RS13095 WP_003185730.1 2666446..2667135(+) (degU) [Bacillus sp. KRF7]
GTGACTAAAGTAAATATTGTAATTATTGATGATCATCAGTTATTCCGAGAAGGTGTCAAACGGATTTTGGATTTTGAGCC
TACTTTTGAGGTAGTGGCTGAAGGAGACGACGGTGATGAAGCGGCTCGCATCGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATTAATATGCCGAATGTAAACGGAGTTGAAGCGACAAAACAGCTTGTCGATTTGTATCCTGAATCAAAGGTC
ATTATTCTATCGATCCATGATGACGAAAACTATGTGACACATGCGTTGAAAACCGGAGCGCGCGGCTATCTGCTGAAAGA
AATGGACGCAGATACATTGATTGAAGCCGTTAAGGTAGTGGCAGAAGGCGGTTCTTATCTTCACCCTAAAGTAACGCACA
ATCTTGTCAATGAATTCCGCCGTCTGGCAACAAGCGGTGTGTCATCACACGCTCAGCACGAAGTATATCCGGAAATCCGC
AGACCTTTGCACATTTTGACAAGACGGGAATGCGAAGTTTTACAGATGCTCGCGGACGGAAAAAGCAACCGCGGCATAGG
AGAATCTTTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTGCAGAAAATGAATGTCAATGACAGAA
CTCAAGCTGTAGTTGTGGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987