Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NL113_RS10280 Genome accession   NZ_CP101130
Coordinates   2074095..2074607 (+) Length   170 a.a.
NCBI ID   WP_006639815.1    Uniprot ID   -
Organism   Bacillus sp. KRF7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2069095..2079607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS10250 - 2069332..2070180 (+) 849 WP_006639821.1 ParB/RepB/Spo0J family partition protein -
  NL113_RS10255 yyaC 2070264..2070881 (-) 618 WP_006639820.1 spore protease YyaC -
  NL113_RS10260 - 2070958..2071974 (+) 1017 WP_040348621.1 membrane protein -
  NL113_RS10265 - 2072151..2072357 (+) 207 WP_006639818.1 DUF951 domain-containing protein -
  NL113_RS10270 ychF 2072548..2073648 (+) 1101 WP_006639817.1 redox-regulated ATPase YchF -
  NL113_RS10275 rpsF 2073761..2074048 (+) 288 WP_006639816.1 30S ribosomal protein S6 -
  NL113_RS10280 ssbA 2074095..2074607 (+) 513 WP_006639815.1 single-stranded DNA-binding protein SsbA Machinery gene
  NL113_RS10285 rpsR 2074655..2074894 (+) 240 WP_003178022.1 30S ribosomal protein S18 -
  NL113_RS10290 - 2075187..2076533 (-) 1347 WP_173400978.1 MFS transporter -
  NL113_RS10295 - 2076697..2078148 (+) 1452 WP_006639813.1 SulP family inorganic anion transporter -
  NL113_RS10300 - 2078216..2078695 (-) 480 WP_006639812.1 spore coat protein -
  NL113_RS10305 - 2078857..2078997 (+) 141 WP_006639811.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18455.07 Da        Isoelectric Point: 4.7306

>NTDB_id=708957 NL113_RS10280 WP_006639815.1 2074095..2074607(+) (ssbA) [Bacillus sp. KRF7]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQYFGGGQNDPNPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=708957 NL113_RS10280 WP_006639815.1 2074095..2074607(+) (ssbA) [Bacillus sp. KRF7]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCCAGCGGTGCAGCTGTTGC
CACCTTTACGCTCGCTGTGAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTCGTTT
GGAGAAGACAAGCTGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGCCTTGCGGGTGTAGATGGACGTTTGCAAACGAGG
AACTATGAAAATCAGCAGGGACAGCGTGTTTATGTGACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAATACTTTGGCGGCGGACAAAACGATCCGAATCCAT
TCGGCGGCAGTCAGAACAATCAAAATCGCAATCAAGGCAACAGCTTTAATGATGACCCATTTGCCAATGATGGAAAACCG
ATTGACATCTCAGATGATGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.465

100

0.865
  ssb Latilactobacillus sakei subsp. sakei 23K

59.538

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

36.872

100

0.388