Detailed information NTG0708919

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NK667_RS32315
• Genome accession: NZ_CP101125
• Coordinates: 7281609..7282481 (-)
• Length: 290 a.a.
• NCBI ID: WP_054616652.1
• Uniprot ID: -
• Organism: Pseudomonas nunensis strain In5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 7276609..7287481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NK667_RS32275 (NK667_32275)	-	7276929..7278227 (-)	1299	WP_054051324.1	NAD(P)/FAD-dependent oxidoreductase	-
NK667_RS32280 (NK667_32280)	-	7278288..7278461 (-)	174	WP_054051322.1	DUF3094 family protein	-
NK667_RS32285 (NK667_32285)	-	7278516..7279043 (-)	528	WP_054616654.1	MOSC domain-containing protein	-
NK667_RS32290 (NK667_32290)	-	7279040..7279666 (-)	627	WP_008154887.1	DUF1780 domain-containing protein	-
NK667_RS32295 (NK667_32295)	-	7279801..7280490 (+)	690	WP_054051318.1	energy-coupling factor ABC transporter permease	-
NK667_RS32300 (NK667_32300)	-	7280554..7280769 (+)	216	WP_008033212.1	hypothetical protein	-
NK667_RS32305 (NK667_32305)	yacG	7280792..7280992 (-)	201	WP_054051315.1	DNA gyrase inhibitor YacG	-
NK667_RS32310 (NK667_32310)	coaE	7280989..7281612 (-)	624	WP_054616653.1	dephospho-CoA kinase	-
NK667_RS32315 (NK667_32315)	pilD	7281609..7282481 (-)	873	WP_054616652.1	prepilin peptidase	Machinery gene
NK667_RS32320 (NK667_32320)	pilC	7282483..7283700 (-)	1218	WP_054616651.1	type II secretion system F family protein	Machinery gene
NK667_RS32325 (NK667_32325)	pilB	7283703..7285403 (-)	1701	WP_054616650.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NK667_RS32330 (NK667_32330)	-	7285629..7286051 (+)	423	WP_054051305.1	pilin	-
NK667_RS32335 (NK667_32335)	-	7286408..7286758 (+)	351	WP_054616649.1	BON domain-containing protein	-
NK667_RS32345 (NK667_32345)	-	7287073..7287369 (-)	297	WP_054051301.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32232.56 Da
• Isoelectric Point: 7.7086

>NTDB_id=708919 NK667_RS32315 WP_054616652.1 7281609..7282481(-) (pilD) [Pseudomonas nunensis strain In5]
MPLNEYLTLYPLAFVITALVLGLVVGSFLNVVIWRLPKMLEREWRTQAHDVLGLPIETPPPTYNLMLPHSQCPHCAQKIR
AWENIPVLSYVLLRGRCSNCAAPISKRYPLTELACGLLSAFIAWQFGFGWPAGLLLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVAGYLVLWSVFWLFKLITGKDGIGHGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AILGVILLRLRDAKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=708919 NK667_RS32315 WP_054616652.1 7281609..7282481(-) (pilD) [Pseudomonas nunensis strain In5]
ATGCCCTTGAATGAATACCTGACCCTGTATCCGCTGGCCTTTGTCATCACGGCGCTGGTGCTCGGCCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGATCTGGCGCCTGCCGAAAATGCTCGAACGGGAATGGCGAACGCAGGCTCACGACGTCCTCGGCC
TGCCCATCGAAACACCTCCGCCGACCTACAACCTGATGCTGCCCCATTCCCAGTGCCCGCACTGCGCCCAGAAGATCCGC
GCCTGGGAAAACATCCCGGTGCTCAGTTACGTGTTGCTGCGCGGGCGCTGCTCGAACTGCGCGGCACCGATCAGCAAGCG
TTATCCGCTGACCGAACTGGCCTGCGGTCTGCTTTCGGCATTCATTGCCTGGCAGTTCGGCTTCGGTTGGCCTGCCGGCC
TGCTGCTGGTGCTGACGTGGGGCCTGTTGGCGATGAGCCTGATTGATGCCGAGCATCAACTGTTGCCCGATGTCCTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGTTGCACGATGCATTGTGGGGTGCGGT
GGCCGGTTACCTGGTGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGATCACCGGCAAGGACGGCATCGGCCACGGCGACT
TCAAGCTGCTGGCAATGCTCGGGGCCTGGGGTGGGTGGCAAGTGCTGCCGCTGACCCTGCTCTTGTCATCGCTGGTGGGG
GCCATCCTTGGGGTGATTTTGCTGCGCTTGCGTGACGCGAAAACTTCGACGCCGATCCCTTTCGGGCCCTATCTGGCAAT
TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.901	97.241	0.524
pilD	Vibrio campbellii strain DS40M4	52.837	97.241	0.514
pilD	Acinetobacter baumannii D1279779	49.635	94.483	0.469
pilD	Acinetobacter nosocomialis M2	48.905	94.483	0.462
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459