Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NK667_RS30895 Genome accession   NZ_CP101125
Coordinates   6979809..6980336 (+) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas nunensis strain In5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6974809..6985336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK667_RS30880 (NK667_30880) bfr 6974834..6975298 (+) 465 WP_007933692.1 bacterioferritin -
  NK667_RS30885 (NK667_30885) uvrA 6975376..6978210 (-) 2835 WP_054616802.1 excinuclease ABC subunit UvrA -
  NK667_RS30890 (NK667_30890) - 6978402..6979799 (+) 1398 WP_054052253.1 MFS transporter -
  NK667_RS30895 (NK667_30895) ssb 6979809..6980336 (+) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  NK667_RS30900 (NK667_30900) - 6980411..6982615 (-) 2205 WP_054616801.1 OsmC domain/YcaO domain-containing protein -
  NK667_RS30905 (NK667_30905) - 6982762..6983919 (-) 1158 WP_054616800.1 glutathionylspermidine synthase family protein -
  NK667_RS30910 (NK667_30910) - 6983931..6984659 (-) 729 WP_054616799.1 DUF1190 domain-containing protein -
  NK667_RS30915 (NK667_30915) - 6984681..6985109 (-) 429 WP_054052260.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=708915 NK667_RS30895 WP_010467282.1 6979809..6980336(+) (ssb) [Pseudomonas nunensis strain In5]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=708915 NK667_RS30895 WP_010467282.1 6979809..6980336(+) (ssb) [Pseudomonas nunensis strain In5]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGTGGCCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCAGCCC
CACGCCAACAGGCTCCGCGTCCGCAGCAGTCGGCTCCACAGCAGTCGCGCCAGGCTCCGCCTCCACAGCAGGCAGCGCCG
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491