Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NGC85_RS00940 Genome accession   NZ_CP101115
Coordinates   205874..206443 (+) Length   189 a.a.
NCBI ID   WP_005052423.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 205874..215652 205874..206443 within 0


Gene organization within MGE regions


Location: 205874..215652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS00940 (NGC85_00940) ssb 205874..206443 (+) 570 WP_005052423.1 single-stranded DNA-binding protein Machinery gene
  NGC85_RS00945 (NGC85_00945) - 206660..207832 (+) 1173 WP_032025663.1 site-specific integrase -
  NGC85_RS00950 (NGC85_00950) - 207959..208891 (-) 933 WP_254804560.1 IS5 family transposase -
  NGC85_RS00955 (NGC85_00955) - 208985..209248 (-) 264 WP_254804561.1 hypothetical protein -
  NGC85_RS00960 (NGC85_00960) - 209352..209960 (+) 609 WP_254804562.1 XRE family transcriptional regulator -
  NGC85_RS00965 (NGC85_00965) - 209957..210565 (-) 609 WP_004726718.1 recombinase family protein -
  NGC85_RS00970 (NGC85_00970) - 210660..213626 (+) 2967 WP_254804563.1 Tn3-like element ISAcsp1 family transposase -
  NGC85_RS00975 (NGC85_00975) - 213652..213861 (+) 210 Protein_189 ATP-binding protein -
  NGC85_RS00980 (NGC85_00980) - 213979..214332 (+) 354 WP_009516421.1 recombinase family protein -
  NGC85_RS00985 (NGC85_00985) - 214573..215652 (-) 1080 WP_005071493.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20870.57 Da        Isoelectric Point: 6.4819

>NTDB_id=708713 NGC85_RS00940 WP_005052423.1 205874..206443(+) (ssb) [Acinetobacter sp. Z1]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGEQQGGGDFNQPRFNNNNQGGGYQNTGYNNNQNGYGQGGNQGNYAGN
PQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=708713 NGC85_RS00940 WP_005052423.1 205874..206443(+) (ssb) [Acinetobacter sp. Z1]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAAACCTTTCCGAATGGTGGATC
TCTGACTCAGTTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACTGGTGAGCGAAAAGAACAAACAGAATGGC
ATCGTATTGTATTGCACAATCGCTTAGGGGAAATTGCTCAGCAATATTTACGTAAAGGCTCAAAAGTTTATATTGAAGGT
TCATTGCGTACACGTCAGTGGACAGACCAAAATGGTCAAGAGCGTTACAGTACTGAAATTCGTGGCGATCAAATGCAAAT
GCTTGACTCACGTCAGCAAGGTGAACAACAAGGTGGTGGTGACTTTAACCAACCACGTTTTAACAATAATAACCAAGGTG
GTGGTTACCAAAATACAGGTTATAACAATAACCAAAATGGTTATGGTCAAGGTGGCAATCAAGGCAATTATGCTGGCAAT
CCACAAGCGGGTAATGGTTTTAATACACCAAAAGCTGCACCACAACCTGCTGCTGCGCCCGCTGATTTAGATGATGATTT
ACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54

100

0.571
  ssb Vibrio cholerae strain A1552

44.776

100

0.476
  ssb Neisseria gonorrhoeae MS11

40.104

100

0.407
  ssb Neisseria meningitidis MC58

40.104

100

0.407