Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J56_RS02920 | Genome accession | NZ_AP018768 |
| Coordinates | 584742..585155 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain CHBN-II-5 isolate 13H40 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 579742..590155
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J56_RS02900 (CHBNII5_05480) | - | 580230..582824 (-) | 2595 | WP_044364772.1 | penicillin-binding protein 1A | - |
| K6J56_RS02905 (CHBNII5_05490) | comA | 582923..583720 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| K6J56_RS02910 (CHBNII5_05500) | comB | 583721..584227 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| K6J56_RS02915 (CHBNII5_05510) | comC | 584224..584745 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| K6J56_RS02920 (CHBNII5_05520) | comD | 584742..585155 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| K6J56_RS02925 (CHBNII5_05530) | comE | 585165..586502 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| K6J56_RS02930 (CHBNII5_05540) | - | 586515..587201 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| K6J56_RS02935 (CHBNII5_05550) | nfuA | 587277..587873 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J56_RS02940 (CHBNII5_05560) | nudC | 587940..588734 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| K6J56_RS02945 (CHBNII5_05570) | - | 588770..589360 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| K6J56_RS02950 (CHBNII5_05580) | - | 589500..589772 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=70860 K6J56_RS02920 WP_011272047.1 584742..585155(+) (comD) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=70860 K6J56_RS02920 WP_011272047.1 584742..585155(+) (comD) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |