Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H7678_RS07515 Genome accession   NZ_AP023393
Coordinates   1517758..1519419 (-) Length   553 a.a.
NCBI ID   WP_003056936.1    Uniprot ID   A0ABU0ACD1
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1512758..1524419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS07490 (SDSE89_14620) - 1513088..1513675 (-) 588 WP_003053329.1 YpmS family protein -
  H7678_RS07495 (SDSE89_14630) - 1513653..1514495 (-) 843 WP_014612448.1 SGNH/GDSL hydrolase family protein -
  H7678_RS07500 (SDSE89_14640) - 1514488..1515327 (-) 840 WP_014612449.1 DegV family protein -
  H7678_RS07505 (SDSE89_14650) - 1515538..1516545 (+) 1008 WP_014612450.1 IS30 family transposase -
  H7678_RS07510 (SDSE89_14660) - 1516673..1517551 (-) 879 WP_232089465.1 LPXTG cell wall anchor domain-containing protein -
  H7678_RS07515 (SDSE89_14670) recN 1517758..1519419 (-) 1662 WP_003056936.1 DNA repair protein RecN Machinery gene
  H7678_RS07520 (SDSE89_14680) - 1519438..1519908 (-) 471 WP_003056949.1 arginine repressor -
  H7678_RS07525 (SDSE89_14690) - 1519895..1520722 (-) 828 WP_003056952.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  H7678_RS07530 (SDSE89_14700) - 1520715..1521587 (-) 873 WP_003056941.1 polyprenyl synthetase family protein -
  H7678_RS07535 (SDSE89_14710) - 1521587..1521802 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  H7678_RS07540 (SDSE89_14720) xseA 1521780..1523120 (-) 1341 WP_065355342.1 exodeoxyribonuclease VII large subunit -
  H7678_RS07545 (SDSE89_14730) - 1523271..1524116 (-) 846 WP_003056961.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62343.53 Da        Isoelectric Point: 4.6207

>NTDB_id=70858 H7678_RS07515 WP_003056936.1 1517758..1519419(-) (recN) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEVAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIVKEYQLLTGDDLSSGDLESELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTSEERVEEIARMLAGADMTEAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=70858 H7678_RS07515 WP_003056936.1 1517758..1519419(-) (recN) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGCTATTAGAAATTTCCATTAAAAATTTTGCCATTATTGAGGAAATCTCTCTGAATTTTGAAAATGGCATGACAGTTTT
GACAGGTGAAACAGGAGCTGGAAAGTCCATTATTATTGATGCCATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGGGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGTTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAATACAAAGGGAT
GTCGACTTCAATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATACCAGCTATTAACAGGAGATGACTTGTCTTCAGGGGATCT
AGAATCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAACCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGAGTTGCTCAAGCCATTGCCCAAAAGATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTCATTGCCATCGCTGATTACCAGTATTTTATTTCTAAAGA
GAGTAAAGAAGAGTCCACTGTTTCGAAGGTAAGGTTGTTAACTTCTGAAGAACGTGTGGAAGAAATTGCCAGAATGCTTG
CTGGTGCAGACATGACAGAAGCTGCTCTCACTCAGGCTCGTGAATTACTGGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.19

100

0.454

Multiple sequence alignment