Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K6J56_RS02905 Genome accession   NZ_AP018768
Coordinates   582923..583720 (+) Length   265 a.a.
NCBI ID   WP_011272050.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-5 isolate 13H40     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 577923..588720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J56_RS02885 (CHBNII5_05450) recR 578081..578683 (-) 603 WP_005626527.1 recombination mediator RecR -
  K6J56_RS02890 (CHBNII5_05460) - 578814..579143 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K6J56_RS02895 (CHBNII5_05470) - 579312..580157 (-) 846 WP_011272052.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J56_RS02900 (CHBNII5_05480) - 580230..582824 (-) 2595 WP_044364772.1 penicillin-binding protein 1A -
  K6J56_RS02905 (CHBNII5_05490) comA 582923..583720 (+) 798 WP_011272050.1 pilus assembly protein PilM Machinery gene
  K6J56_RS02910 (CHBNII5_05500) comB 583721..584227 (+) 507 WP_011272049.1 competence protein ComB Machinery gene
  K6J56_RS02915 (CHBNII5_05510) comC 584224..584745 (+) 522 WP_011272048.1 competence protein ComC Machinery gene
  K6J56_RS02920 (CHBNII5_05520) comD 584742..585155 (+) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  K6J56_RS02925 (CHBNII5_05530) comE 585165..586502 (+) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  K6J56_RS02930 (CHBNII5_05540) - 586515..587201 (+) 687 WP_011272045.1 ComF family protein -
  K6J56_RS02935 (CHBNII5_05550) nfuA 587277..587873 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31392.66 Da        Isoelectric Point: 6.2334

>NTDB_id=70857 K6J56_RS02905 WP_011272050.1 582923..583720(+) (comA) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPISLNELWFDYRSTSLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=70857 K6J56_RS02905 WP_011272050.1 582923..583720(+) (comA) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTCTTT
AAATGAATTATGGTTTGATTATCGTTCTACCTCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
CTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

100

100

1
  comA Haemophilus influenzae Rd KW20

96.226

100

0.962

Multiple sequence alignment