Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD07_RS23385 Genome accession   NZ_CP101080
Coordinates   4856300..4856824 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter cronae strain OT130     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4851300..4861824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD07_RS23365 (NMD07_23370) soxR 4852944..4853402 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  NMD07_RS23370 (NMD07_23375) soxS 4853489..4853812 (+) 324 WP_005132611.1 superoxide response transcriptional regulator SoxS -
  NMD07_RS23375 (NMD07_23380) - 4853815..4855401 (-) 1587 WP_085049639.1 EAL domain-containing protein -
  NMD07_RS23380 (NMD07_23385) - 4855953..4856234 (+) 282 WP_038636276.1 YjcB family protein -
  NMD07_RS23385 (NMD07_23390) ssb 4856300..4856824 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD07_RS23390 (NMD07_23395) uvrA 4857076..4859898 (+) 2823 WP_085049638.1 excinuclease ABC subunit UvrA -
  NMD07_RS23395 (NMD07_23400) - 4859984..4860340 (-) 357 WP_038636271.1 MmcQ/YjbR family DNA-binding protein -
  NMD07_RS23400 (NMD07_23405) aphA 4860467..4861180 (-) 714 WP_085049637.1 acid phosphatase AphA -
  NMD07_RS23405 - 4861325..4861474 (+) 150 Protein_4591 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=708538 NMD07_RS23385 WP_003826621.1 4856300..4856824(-) (ssb) [Citrobacter cronae strain OT130]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=708538 NMD07_RS23385 WP_003826621.1 4856300..4856824(-) (ssb) [Citrobacter cronae strain OT130]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5