Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD21_RS23325 Genome accession   NZ_CP101060
Coordinates   4852130..4852654 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter portucalensis strain OT205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4847130..4857654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD21_RS23305 (NMD21_23280) soxR 4848772..4849230 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  NMD21_RS23310 (NMD21_23285) soxS 4849317..4849640 (+) 324 WP_079938971.1 superoxide response transcriptional regulator SoxS -
  NMD21_RS23315 (NMD21_23290) - 4849643..4851229 (-) 1587 WP_370614607.1 EAL domain-containing protein -
  NMD21_RS23320 (NMD21_23295) - 4851782..4852063 (+) 282 WP_003826625.1 YjcB family protein -
  NMD21_RS23325 (NMD21_23300) ssb 4852130..4852654 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD21_RS23330 (NMD21_23305) uvrA 4852906..4855728 (+) 2823 WP_079938968.1 excinuclease ABC subunit UvrA -
  NMD21_RS23335 (NMD21_23310) - 4855813..4856169 (-) 357 WP_008786927.1 MmcQ/YjbR family DNA-binding protein -
  NMD21_RS23340 (NMD21_23315) aphA 4856297..4857010 (-) 714 WP_079938967.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=708424 NMD21_RS23325 WP_003826621.1 4852130..4852654(-) (ssb) [Citrobacter portucalensis strain OT205]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=708424 NMD21_RS23325 WP_003826621.1 4852130..4852654(-) (ssb) [Citrobacter portucalensis strain OT205]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACAGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAACAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5