Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD02_RS24085 Genome accession   NZ_CP101051
Coordinates   4884513..4885037 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter meridianamericanus strain OT98     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4879513..4890037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD02_RS24065 (NMD02_24020) soxS 4879717..4880040 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  NMD02_RS24070 (NMD02_24025) - 4880043..4881629 (-) 1587 WP_151218061.1 EAL domain-containing protein -
  NMD02_RS24075 (NMD02_24030) - 4882184..4882465 (+) 282 WP_151218062.1 YjcB family protein -
  NMD02_RS24080 (NMD02_24035) - 4882549..4884321 (-) 1773 Protein_4723 autotransporter outer membrane beta-barrel domain-containing protein -
  NMD02_RS24085 (NMD02_24040) ssb 4884513..4885037 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD02_RS24090 (NMD02_24045) uvrA 4885290..4888112 (+) 2823 WP_016155358.1 excinuclease ABC subunit UvrA -
  NMD02_RS24095 (NMD02_24050) - 4888154..4888507 (-) 354 WP_151218063.1 MmcQ/YjbR family DNA-binding protein -
  NMD02_RS24100 (NMD02_24055) aphA 4888627..4889340 (-) 714 WP_151218064.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=708383 NMD02_RS24085 WP_003826621.1 4884513..4885037(-) (ssb) [Citrobacter meridianamericanus strain OT98]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=708383 NMD02_RS24085 WP_003826621.1 4884513..4885037(-) (ssb) [Citrobacter meridianamericanus strain OT98]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAAGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5