Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD08_RS23865 Genome accession   NZ_CP101036
Coordinates   4908637..4909161 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter meridianamericanus strain OT146     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4903637..4914161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD08_RS23845 (NMD08_23755) soxS 4903841..4904164 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  NMD08_RS23850 (NMD08_23760) - 4904167..4905753 (-) 1587 WP_151224610.1 EAL domain-containing protein -
  NMD08_RS23855 (NMD08_23765) - 4906308..4906589 (+) 282 WP_151218062.1 YjcB family protein -
  NMD08_RS23860 (NMD08_23770) - 4906673..4908178 (-) 1506 WP_370619191.1 autotransporter outer membrane beta-barrel domain-containing protein -
  NMD08_RS23865 (NMD08_23775) ssb 4908637..4909161 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD08_RS23870 (NMD08_23780) uvrA 4909414..4912236 (+) 2823 WP_016155358.1 excinuclease ABC subunit UvrA -
  NMD08_RS23875 (NMD08_23785) - 4912278..4912631 (-) 354 WP_151218063.1 MmcQ/YjbR family DNA-binding protein -
  NMD08_RS23880 (NMD08_23790) aphA 4912751..4913464 (-) 714 WP_151218064.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=708314 NMD08_RS23865 WP_003826621.1 4908637..4909161(-) (ssb) [Citrobacter meridianamericanus strain OT146]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=708314 NMD08_RS23865 WP_003826621.1 4908637..4909161(-) (ssb) [Citrobacter meridianamericanus strain OT146]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAAGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5