Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   H7679_RS01055 Genome accession   NZ_AP023392
Coordinates   162779..163072 (+) Length   97 a.a.
NCBI ID   WP_024394703.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 157779..168072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS01015 (DAT300_01690) - 157941..160013 (+) 2073 WP_184495869.1 DUF859 family phage minor structural protein -
  H7679_RS01020 (DAT300_01700) - 160075..160341 (+) 267 WP_184495871.1 hypothetical protein -
  H7679_RS01025 (DAT300_01710) - 160354..160809 (+) 456 WP_184495873.1 hypothetical protein -
  H7679_RS01030 (DAT300_01720) - 160784..160987 (+) 204 WP_029751977.1 phage holin -
  H7679_RS01035 (DAT300_01730) - 161117..161827 (+) 711 WP_184495875.1 CHAP domain-containing protein -
  H7679_RS01040 (DAT300_01740) prx 161973..162158 (+) 186 WP_016056161.1 hypothetical protein Regulator
  H7679_RS01045 (DAT300_01750) comGC 162159..162419 (+) 261 WP_184495877.1 competence type IV pilus major pilin ComGC Machinery gene
  H7679_RS01050 (DAT300_01760) comGD 162400..162807 (+) 408 WP_024395446.1 competence type IV pilus minor pilin ComGD Machinery gene
  H7679_RS01055 (DAT300_01770) comGE 162779..163072 (+) 294 WP_024394703.1 competence type IV pilus minor pilin ComGE Machinery gene
  H7679_RS01060 (DAT300_01780) comGF/cglF 163059..163493 (+) 435 WP_014637316.1 competence type IV pilus minor pilin ComGF Machinery gene
  H7679_RS01065 (DAT300_01790) comGG 163471..163881 (+) 411 WP_044676305.1 competence type IV pilus minor pilin ComGG -
  H7679_RS01070 (DAT300_01800) comGH 163938..164891 (+) 954 WP_184495879.1 class I SAM-dependent methyltransferase Machinery gene
  H7679_RS01075 (DAT300_01810) - 164941..166128 (+) 1188 WP_024401510.1 acetate kinase -
  H7679_RS01080 (DAT300_01820) - 166443..166994 (+) 552 WP_024395442.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10771.63 Da        Isoelectric Point: 9.8348

>NTDB_id=70713 H7679_RS01055 WP_024394703.1 162779..163072(+) (comGE) [Streptococcus suis strain DAT300]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVKRTAD
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=70713 H7679_RS01055 WP_024394703.1 162779..163072(+) (comGE) [Streptococcus suis strain DAT300]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGTAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAAGTTCTCAATC
TGGCTCAGATGGCTGTCCAGACCGAGCAAGATAACTTAGCCTTAAACGGTGTTACAGTTCAGGTGAAACGAACGGCGGAC
AGGGTTGCGGTTTTCCATGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

53.608

100

0.536
  comGE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371

Multiple sequence alignment