Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   K6J65_RS00170 Genome accession   NZ_AP018764
Coordinates   39843..40517 (-) Length   224 a.a.
NCBI ID   WP_005647998.1    Uniprot ID   Q4QLV0
Organism   Haemophilus influenzae strain CHBN-II-1 isolate 13H34     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 34843..45517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J65_RS00150 (CHBNII1_00300) hinT 36551..36901 (+) 351 WP_005627389.1 purine nucleoside phosphoramidase -
  K6J65_RS00155 (CHBNII1_00310) - 36901..37251 (+) 351 WP_005647993.1 YcfL family protein -
  K6J65_RS00160 (CHBNII1_00320) nagZ 37255..38310 (+) 1056 WP_105892660.1 beta-N-acetylhexosaminidase -
  K6J65_RS00165 (CHBNII1_00330) rlmC 38303..39478 (+) 1176 WP_021034785.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  K6J65_RS00170 (CHBNII1_00340) crp 39843..40517 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  K6J65_RS00175 (CHBNII1_00350) - 40502..40753 (-) 252 WP_005647999.1 YheU family protein -
  K6J65_RS00180 (CHBNII1_00360) slmA 40775..41431 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  K6J65_RS00185 (CHBNII1_00370) dut 41435..41890 (-) 456 WP_005631431.1 dUTP diphosphatase -
  K6J65_RS00190 (CHBNII1_00380) coaBC 41938..43140 (-) 1203 WP_011272308.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  K6J65_RS00195 (CHBNII1_00390) radC 43303..43968 (+) 666 WP_013526173.1 DNA repair protein RadC -
  K6J65_RS00200 (CHBNII1_00400) rpmB 44182..44418 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  K6J65_RS00205 (CHBNII1_00410) rpmG 44430..44600 (+) 171 WP_005613503.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25151.85 Da        Isoelectric Point: 6.8375

>NTDB_id=70708 K6J65_RS00170 WP_005647998.1 39843..40517(-) (crp) [Haemophilus influenzae strain CHBN-II-1 isolate 13H34]
MSNELTEIDEVVTSSQEEATQRDPVLDWFLTHCHLHKYPAKSTLIHAGEDATTLYYVIKGSVMVSSKDDEGKEMILTYLG
AGQFFGEAGLFDEGSKRSAWVKTKTTCEIAEISYKKYRQLIQANPEILMFLTAQLARRLQNTSRQVTNLAFLDVAGRIAQ
TLMNLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGAR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=70708 K6J65_RS00170 WP_005647998.1 39843..40517(-) (crp) [Haemophilus influenzae strain CHBN-II-1 isolate 13H34]
ATGTCAAATGAATTAACCGAAATTGATGAAGTTGTAACCTCCTCTCAAGAAGAAGCAACTCAACGAGATCCCGTTTTAGA
TTGGTTTCTTACTCACTGCCATTTGCATAAATATCCTGCAAAATCAACTTTAATTCATGCTGGGGAAGATGCGACCACGC
TGTATTATGTAATTAAAGGTTCTGTAATGGTATCTTCAAAAGATGATGAAGGCAAAGAGATGATCCTCACTTACTTAGGA
GCAGGACAATTTTTTGGCGAAGCGGGATTATTTGATGAAGGTTCAAAACGATCAGCTTGGGTAAAAACAAAAACAACATG
TGAAATTGCTGAAATTTCCTATAAGAAATATCGCCAGTTGATTCAGGCAAACCCTGAAATCTTAATGTTTCTCACTGCAC
AATTGGCAAGACGTTTGCAAAATACATCACGTCAAGTCACGAATTTGGCATTTTTAGACGTCGCAGGTCGCATCGCTCAA
ACTTTAATGAACTTAGCTAAACAGCCTGAAGCAATGACGCATCCTGATGGTATGCAAATCAAAATTACACGCCAAGAAAT
AGGGCAAATGGTGGGTTGTTCACGAGAAACTGTGGGGCGCATTATTAAGATGTTGGAGGATCAGAATCTTATCCACGCTC
ATGGAAAAACAATCGTTGTATATGGCGCAAGATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(36-124)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(156-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

100

100

1
  crp Vibrio cholerae strain A1552

75.49

91.071

0.687
  crp Acinetobacter baumannii D1279779

48.705

86.161

0.42

Multiple sequence alignment