Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H7679_RS00360 Genome accession   NZ_AP023392
Coordinates   63100..63690 (+) Length   196 a.a.
NCBI ID   WP_063725145.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58100..68690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS00350 (DAT300_00520) - 59483..61006 (+) 1524 WP_063725143.1 hypothetical protein -
  H7679_RS00355 (DAT300_00530) hexB 61124..63061 (+) 1938 WP_063725144.1 DNA mismatch repair endonuclease MutL Machinery gene
  H7679_RS00360 (DAT300_00540) ruvA 63100..63690 (+) 591 WP_063725145.1 Holliday junction branch migration protein RuvA Machinery gene
  H7679_RS00365 (DAT300_00550) - 63849..64418 (+) 570 WP_014637285.1 DNA-3-methyladenine glycosylase I -
  H7679_RS00370 (DAT300_00560) cinA 64455..65636 (+) 1182 WP_044685818.1 competence/damage-inducible protein A Machinery gene
  H7679_RS00375 (DAT300_00570) recA 65688..66839 (+) 1152 WP_029172053.1 recombinase RecA Machinery gene
  H7679_RS00380 (DAT300_00580) spx 67075..67473 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  H7679_RS00385 (DAT300_00590) - 67573..67839 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  H7679_RS00390 (DAT300_00600) ruvX 67839..68258 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  H7679_RS00395 (DAT300_00610) - 68270..68590 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21685.04 Da        Isoelectric Point: 5.3356

>NTDB_id=70700 H7679_RS00360 WP_063725145.1 63100..63690(+) (ruvA) [Streptococcus suis strain DAT300]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVISEEAGPVQPTAPASENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=70700 H7679_RS00360 WP_063725145.1 63100..63690(+) (ruvA) [Streptococcus suis strain DAT300]
ATGTACGACTATATTAAAGGAATTTTAACGAAAATAACTGCAAAATACATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAACCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTCGATGATAATGATGGGCTTGTTCGTGCCATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTTATCA
GCGAAGAAGCTGGTCCTGTCCAACCAACAGCTCCTGCCAGTGAAAATATCGCCCTCGAAGAAGCCATGGAAGCCATGGAA
GCGCTCGGTTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.413

Multiple sequence alignment