Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   NMD89_RS13850 Genome accession   NZ_CP100786
Coordinates   2995895..2996572 (+) Length   225 a.a.
NCBI ID   WP_370547909.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT111     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2990895..3001572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD89_RS13820 (NMD89_13800) - 2991856..2992872 (-) 1017 WP_370547906.1 YqaJ viral recombinase family protein -
  NMD89_RS13825 (NMD89_13805) - 2992933..2993076 (-) 144 WP_370547907.1 hypothetical protein -
  NMD89_RS13830 (NMD89_13810) bet 2993157..2993975 (-) 819 WP_000414662.1 phage recombination protein Bet -
  NMD89_RS13835 (NMD89_13815) - 2994055..2994474 (-) 420 WP_218359863.1 single-stranded DNA-binding protein -
  NMD89_RS13840 (NMD89_13820) - 2994490..2994816 (-) 327 WP_282156632.1 plasmid-related protein -
  NMD89_RS13845 (NMD89_13825) - 2995184..2995786 (+) 603 WP_370547908.1 hypothetical protein -
  NMD89_RS13850 (NMD89_13830) ideA 2995895..2996572 (+) 678 WP_370547909.1 endonuclease Regulator
  NMD89_RS13855 (NMD89_13835) - 2996583..2997039 (-) 457 Protein_2676 IS5 family transposase -
  NMD89_RS13860 (NMD89_13840) - 2997415..2997798 (+) 384 WP_370547910.1 hypothetical protein -
  NMD89_RS13865 (NMD89_13845) - 2997803..2999638 (+) 1836 WP_370547911.1 hypothetical protein -
  NMD89_RS13870 (NMD89_13850) - 2999654..3000619 (+) 966 WP_370547912.1 hypothetical protein -
  NMD89_RS13875 - 3000630..3000758 (+) 129 WP_123161597.1 transposase -
  NMD89_RS13880 (NMD89_13855) - 3000944..3001432 (-) 489 WP_032469931.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26396.47 Da        Isoelectric Point: 8.2321

>NTDB_id=706945 NMD89_RS13850 WP_370547909.1 2995895..2996572(+) (ideA) [Edwardsiella tarda strain GT111]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYQPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRAQYGLRLSRQQTQLFEAWSRMDPVDEWEITRDNRINALQSNKNYHIKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=706945 NMD89_RS13850 WP_370547909.1 2995895..2996572(+) (ideA) [Edwardsiella tarda strain GT111]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATACCAACCAAGGAAGCAACCGAAACGAGGTGAGCGCTTAGAGTGGGAGCAC
GTAGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCAGATCTCCATAACCTCGTACCATCTGTAGGAGAGCTCAATGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGAGCCTATGGCCAATGCGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATCTATTTCTACATGCGAGCTCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAATGGGAGATTACGCGAGACAACCGAATAAATG
CCTTACAAAGCAATAAAAACTATCATATAAAAAAATAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(38-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

91.928

99.111

0.911
  dns Vibrio parahaemolyticus RIMD 2210633

51.982

100

0.524
  dns Aliivibrio fischeri ES114

51.316

100

0.52
  dns Vibrio cholerae strain A1552

50.673

99.111

0.502
  dns Campylobacter jejuni RM1221

37.946

99.556

0.378