Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   PF977_RS06840 Genome accession   NZ_CP116012
Coordinates   1347220..1347915 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain SRCM124333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1342220..1352915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS06820 (PF977_06820) folC 1343151..1344443 (+) 1293 WP_015714460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PF977_RS06825 (PF977_06825) comC 1344583..1345329 (+) 747 WP_072592551.1 prepilin peptidase Machinery gene
  PF977_RS06830 (PF977_06830) spoIIB 1345463..1346461 (+) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  PF977_RS06835 (PF977_06835) maf 1346614..1347183 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  PF977_RS06840 (PF977_06840) ysxA/radC 1347220..1347915 (+) 696 WP_003246034.1 RadC family protein Machinery gene
  PF977_RS06845 (PF977_06845) mreB 1348007..1349020 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  PF977_RS06850 (PF977_06850) mreC 1349051..1349923 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  PF977_RS06855 (PF977_06855) mreD 1349920..1350438 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  PF977_RS06860 (PF977_06860) minC 1350491..1351171 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  PF977_RS06865 (PF977_06865) minD 1351173..1351979 (+) 807 WP_014664846.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=706870 PF977_RS06840 WP_003246034.1 1347220..1347915(+) (ysxA/radC) [Bacillus subtilis strain SRCM124333]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=706870 PF977_RS06840 WP_003246034.1 1347220..1347915(+) (ysxA/radC) [Bacillus subtilis strain SRCM124333]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTGGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424