Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   PF976_RS13580 Genome accession   NZ_CP116011
Coordinates   2607256..2607951 (-) Length   231 a.a.
NCBI ID   WP_013353063.1    Uniprot ID   A0A9P1JJ48
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2602256..2612951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS13550 (PF976_13550) - 2602270..2603073 (-) 804 WP_013353058.1 M23 family metallopeptidase -
  PF976_RS13555 (PF976_13555) minD 2603202..2604005 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  PF976_RS13560 (PF976_13560) minC 2604008..2604688 (-) 681 WP_013353059.1 septum site-determining protein MinC -
  PF976_RS13565 (PF976_13565) mreD 2604742..2605260 (-) 519 WP_014470782.1 rod shape-determining protein MreD -
  PF976_RS13570 (PF976_13570) mreC 2605257..2606120 (-) 864 WP_013353061.1 rod shape-determining protein MreC -
  PF976_RS13575 (PF976_13575) mreB 2606151..2607164 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  PF976_RS13580 (PF976_13580) ysxA/radC 2607256..2607951 (-) 696 WP_013353063.1 RadC family protein Machinery gene
  PF976_RS13585 (PF976_13585) - 2607983..2608552 (-) 570 WP_013353064.1 Maf family protein -
  PF976_RS13590 (PF976_13590) - 2608694..2609695 (-) 1002 WP_013353065.1 SPOR domain-containing protein -
  PF976_RS13595 (PF976_13595) comC 2609822..2610574 (-) 753 WP_013353066.1 prepilin peptidase Machinery gene
  PF976_RS13600 (PF976_13600) - 2610714..2612006 (-) 1293 WP_013353067.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26066.29 Da        Isoelectric Point: 8.9381

>NTDB_id=706783 PF976_RS13580 WP_013353063.1 2607256..2607951(-) (ysxA/radC) [Bacillus amyloliquefaciens strain SRCM124317]
MIIRDLPLKLRDFPEKEKPRERLLHCGAEHLSNNELLAILLRTGTKHESVMNLSHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=706783 PF976_RS13580 WP_013353063.1 2607256..2607951(-) (ysxA/radC) [Bacillus amyloliquefaciens strain SRCM124317]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCATTGCGG
GGCCGAACATCTTTCTAACAATGAATTGCTCGCCATTCTGCTGAGGACGGGAACGAAACATGAGTCCGTCATGAATCTCT
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCTTCTGCCCAGGAGCTTTCCAGCATCCCCGGA
ATCGGCACGGTGAAAGCCGTTCAGATCCTTGCTGCAATTGAGCTGGGGAGCCGTATTCATAAGACATCCGCCGGAGAGCA
TTGCGTCATCCGTTCTCCCGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAAGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCATTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
CACACCGAGCAGGGAAGATATAGAAGTAACTAGACGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGTTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJ48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429