Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NLV76_RS20905 Genome accession   NZ_CP100752
Coordinates   4077962..4078480 (-) Length   172 a.a.
NCBI ID   WP_254502008.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4072962..4083480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS20875 (NLV76_20875) - 4073468..4074820 (+) 1353 WP_254502002.1 MFS transporter -
  NLV76_RS20880 (NLV76_20880) - 4074851..4075405 (-) 555 WP_059292117.1 maltose acetyltransferase domain-containing protein -
  NLV76_RS20885 (NLV76_20885) - 4075424..4075804 (-) 381 WP_254502004.1 VOC family protein -
  NLV76_RS20890 (NLV76_20890) - 4075861..4076796 (-) 936 WP_059353198.1 LacI family DNA-binding transcriptional regulator -
  NLV76_RS20895 (NLV76_20895) xth 4076856..4077614 (-) 759 WP_254502006.1 exodeoxyribonuclease III -
  NLV76_RS20900 (NLV76_20900) rpsR 4077680..4077919 (-) 240 WP_010332656.1 30S ribosomal protein S18 -
  NLV76_RS20905 (NLV76_20905) ssbA 4077962..4078480 (-) 519 WP_254502008.1 single-stranded DNA-binding protein SsbA Machinery gene
  NLV76_RS20910 (NLV76_20910) rpsF 4078521..4078808 (-) 288 WP_010332658.1 30S ribosomal protein S6 -
  NLV76_RS20915 (NLV76_20915) ychF 4078919..4080019 (-) 1101 WP_254502010.1 redox-regulated ATPase YchF -
  NLV76_RS20920 (NLV76_20920) - 4080146..4082149 (-) 2004 WP_254502011.1 molybdopterin-dependent oxidoreductase -
  NLV76_RS20925 (NLV76_20925) - 4082200..4082406 (-) 207 WP_044160282.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18699.24 Da        Isoelectric Point: 4.7621

>NTDB_id=706721 NLV76_RS20905 WP_254502008.1 4077962..4078480(-) (ssbA) [Bacillus halotolerans strain MEC_B301]
MLNRVVLVGRLTKDPEPRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=706721 NLV76_RS20905 WP_254502008.1 4077962..4078480(-) (ssbA) [Bacillus halotolerans strain MEC_B301]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCCTCGTTATACGCCAAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGGCAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

57.627

100

0.593
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

61.628

0.39
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.384