Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NLV76_RS12780 Genome accession   NZ_CP100752
Coordinates   2488426..2489496 (-) Length   356 a.a.
NCBI ID   WP_254500944.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2483426..2494496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS12735 (NLV76_12735) tapA 2483901..2484662 (-) 762 WP_254500942.1 amyloid fiber anchoring/assembly protein TapA -
  NLV76_RS12740 (NLV76_12740) - 2484939..2485262 (+) 324 WP_254500943.1 YqzG/YhdC family protein -
  NLV76_RS12745 (NLV76_12745) - 2485305..2485484 (-) 180 WP_003236949.1 YqzE family protein -
  NLV76_RS12750 (NLV76_12750) comGG 2485556..2485930 (-) 375 WP_059335411.1 competence type IV pilus minor pilin ComGG Machinery gene
  NLV76_RS12755 (NLV76_12755) comGF 2485931..2486314 (-) 384 WP_227533974.1 competence type IV pilus minor pilin ComGF Machinery gene
  NLV76_RS12760 (NLV76_12760) comGE 2486340..2486687 (-) 348 WP_059352380.1 competence type IV pilus minor pilin ComGE Machinery gene
  NLV76_RS12765 (NLV76_12765) comGD 2486671..2487102 (-) 432 WP_044154579.1 competence type IV pilus minor pilin ComGD Machinery gene
  NLV76_RS12770 (NLV76_12770) comGC 2487092..2487388 (-) 297 WP_044154578.1 competence type IV pilus major pilin ComGC Machinery gene
  NLV76_RS12775 (NLV76_12775) comGB 2487402..2488439 (-) 1038 WP_302329767.1 competence type IV pilus assembly protein ComGB Machinery gene
  NLV76_RS12780 (NLV76_12780) comGA 2488426..2489496 (-) 1071 WP_254500944.1 competence protein ComGA Machinery gene
  NLV76_RS12785 (NLV76_12785) - 2489817..2490227 (-) 411 WP_193659474.1 CBS domain-containing protein -
  NLV76_RS12790 (NLV76_12790) - 2490290..2491243 (-) 954 WP_254500945.1 magnesium transporter CorA family protein -
  NLV76_RS12795 (NLV76_12795) - 2491387..2492716 (+) 1330 Protein_2480 hemolysin family protein -
  NLV76_RS12800 (NLV76_12800) - 2492796..2493635 (-) 840 WP_044154573.1 STAS domain-containing protein -
  NLV76_RS12810 (NLV76_12810) mgsR 2493868..2494248 (-) 381 WP_052330300.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40395.53 Da        Isoelectric Point: 8.6487

>NTDB_id=706692 NLV76_RS12780 WP_254500944.1 2488426..2489496(-) (comGA) [Bacillus halotolerans strain MEC_B301]
MDSIEKTSKTLIEEAYRTKASDIHIVPRELDAIIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGDVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLIQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIVLGEIRDAETAQIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCEDGCSSVYCRLSRNVRRASVYEPLYGKNLQQCIQEAKGD
NANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=706692 NLV76_RS12780 WP_254500944.1 2488426..2489496(-) (comGA) [Bacillus halotolerans strain MEC_B301]
GTGGATTCGATAGAAAAAACAAGCAAAACTTTAATTGAAGAGGCATATAGGACGAAGGCCTCTGACATTCACATTGTGCC
GAGGGAACTGGACGCAATCATTCATTTTCGGGTTGACCATGCATTGCTGAAAAAGCGAAACATGAAAAAAGAAGAGTGTG
TAAGGCTCATTTCTCATTTTAAGTTTCTCTCAGCTATGGACATAGGGGAAAGAAGAAAGCCGCAAAATGGATCTCTTACT
CTAAAATTAAAAGAGGGTGACGTTCACTTAAGGATGTCAACGCTCCCGACAATTAACGAAGAAAGCCTCGTCATCAGAGT
GATGCCTCAGTATAATATCCCTTCGATTGACAAACTGTCTTTATTCCCAAAGACAGGAGCCACCTTGCTTTCATTTTTAA
AACACTCCCACGGCATGCTGATTTTTACCGGGCCAACAGGCTCTGGGAAAACAACAACATTATATTCTCTGATCCAATAT
GCAAAAAAACATTTTAATCGAAACATTGTCACACTTGAAGATCCAGTGGAAACGAGGGATGAAGATGTTCTTCAAGTGCA
GGTGAATGAAAAAGCCGGTGTCACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCCGATATGATCGTTTTAG
GTGAGATAAGAGACGCTGAAACAGCCCAGATCGCGGTGCGGGCAGCGATGACTGGTCATTTAGTGCTGACGAGCCTTCAT
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTTGGCATTAATATGAATGAAATCGAGCAAACGGTTATTGC
GATAGCGGCTCAGCGTTTAGTTGATTTGGCTTGCCCGTTTTGTGAAGACGGATGTTCATCAGTGTATTGCCGCCTGTCAC
GAAATGTCAGGAGAGCAAGCGTATACGAGCCGCTTTACGGGAAAAACCTTCAGCAGTGTATCCAGGAAGCGAAAGGGGAC
AATGCAAATTACCAATATCAAACGCTGCGTCAAATTATAAGAAAAGGGATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

95.225

100

0.952