Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NL778_RS22910 Genome accession   NZ_CP100652
Coordinates   5026970..5027521 (-) Length   183 a.a.
NCBI ID   WP_012316509.1    Uniprot ID   A0A3R8V1N6
Organism   Pseudomonas putida strain HSM-C2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5021970..5032521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL778_RS22890 (NL778_22890) thiC 5022176..5024062 (-) 1887 WP_012316506.1 phosphomethylpyrimidine synthase ThiC -
  NL778_RS22895 (NL778_22895) - 5024487..5025920 (+) 1434 WP_115273751.1 TolC family outer membrane protein -
  NL778_RS22900 (NL778_22900) - 5025995..5026267 (+) 273 Protein_4506 DUF3077 domain-containing protein -
  NL778_RS22905 (NL778_22905) - 5026411..5026899 (+) 489 WP_080516500.1 heme-binding protein -
  NL778_RS22910 (NL778_22910) ssb 5026970..5027521 (-) 552 WP_012316509.1 single-stranded DNA-binding protein Machinery gene
  NL778_RS22915 (NL778_22915) - 5027531..5028925 (-) 1395 WP_012316510.1 MFS transporter -
  NL778_RS22920 (NL778_22920) uvrA 5029055..5031889 (+) 2835 WP_012316511.1 excinuclease ABC subunit UvrA -
  NL778_RS22925 (NL778_22925) bfr 5031957..5032421 (-) 465 WP_012316512.1 bacterioferritin -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20421.52 Da        Isoelectric Point: 5.9312

>NTDB_id=706065 NL778_RS22910 WP_012316509.1 5026970..5027521(-) (ssb) [Pseudomonas putida strain HSM-C2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQGGGDQYNQGGGNNYNQGGQQQQYNQAPPRQQAPRPQQAQQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=706065 NL778_RS22910 WP_012316509.1 5026970..5027521(-) (ssb) [Pseudomonas putida strain HSM-C2]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAAAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCTGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGTGGCCGTCCGCAGAACCAGCAAGGTGGCGGCGACCAGTACAACCAGGGTGGTGGTAACAACTACA
ACCAGGGTGGTCAGCAGCAACAGTACAACCAGGCTCCACCGCGTCAGCAGGCCCCGCGCCCGCAACAGGCCCAGCAGCGC
CCAGCGCCGCAACAGCCCGCGCCGCAGCCGGCTGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8V1N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.595

100

0.552
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.514
  ssb Neisseria gonorrhoeae MS11

49.189

100

0.497
  ssb Neisseria meningitidis MC58

47.778

98.361

0.47