NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	OSK17_RS15140	Genome accession	NZ_CP115738
Coordinates	2851538..2852143 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain W7
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2846538..2857143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSK17_RS15110 (OSK17_15110)	-	2847351..2847740 (+)	390	WP_031315243.1	TIGR04086 family membrane protein	-
OSK17_RS15115 (OSK17_15115)	yajC	2847797..2848063 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
OSK17_RS15120 (OSK17_15120)	tgt	2848100..2849245 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
OSK17_RS15125 (OSK17_15125)	queA	2849272..2850300 (-)	1029	WP_041850173.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
OSK17_RS15130 (OSK17_15130)	yrzS	2850330..2850530 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
OSK17_RS15135 (OSK17_15135)	ruvB	2850523..2851527 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
OSK17_RS15140 (OSK17_15140)	ruvA	2851538..2852143 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
OSK17_RS15145 (OSK17_15145)	bofC	2852282..2852794 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
OSK17_RS15150 (OSK17_15150)	csbX	2852842..2854149 (-)	1308	WP_015483512.1	MFS transporter	-
OSK17_RS15155 (OSK17_15155)	iolG	2854220..2855245 (-)	1026	WP_032726305.1	inositol 2-dehydrogenase	-
OSK17_RS15160 (OSK17_15160)	yrzF	2855483..2856130 (+)	648	WP_003246159.1	phosphotransferase	-
OSK17_RS15165 (OSK17_15165)	-	2856176..2856298 (-)	123	WP_003229707.1	hypothetical protein	-
OSK17_RS15170 (OSK17_15170)	-	2856461..2856829 (+)	369	WP_172655417.1	DUF5412 family protein	-
OSK17_RS15175 (OSK17_15175)	-	2856836..2856976 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=705958 OSK17_RS15140 WP_003229717.1 2851538..2852143(-) (ruvA) [Bacillus subtilis strain W7]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=705958 OSK17_RS15140 WP_003229717.1 2851538..2852143(-) (ruvA) [Bacillus subtilis strain W7]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATAATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0705958