Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NKJ47_RS15595 Genome accession   NZ_CP100647
Coordinates   3759183..3760568 (-) Length   461 a.a.
NCBI ID   WP_242082206.1    Uniprot ID   A0AAU8IA65
Organism   Xanthomonas sacchari strain DD13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3754183..3765568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKJ47_RS15585 - 3756168..3757469 (+) 1302 WP_254458742.1 histidine-type phosphatase -
  NKJ47_RS15590 - 3757580..3758884 (+) 1305 WP_254458743.1 jacalin-like lectin -
  NKJ47_RS15595 radA 3759183..3760568 (-) 1386 WP_242082206.1 DNA repair protein RadA Machinery gene
  NKJ47_RS15600 - 3760876..3762765 (-) 1890 WP_254458744.1 tetratricopeptide repeat protein -
  NKJ47_RS15605 - 3762916..3763518 (-) 603 WP_254458745.1 ATP-dependent Clp protease proteolytic subunit -
  NKJ47_RS15610 - 3763574..3764383 (+) 810 WP_254458746.1 sigma-70 family RNA polymerase sigma factor -
  NKJ47_RS15615 - 3764428..3765198 (-) 771 WP_254458747.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48432.68 Da        Isoelectric Point: 7.4579

>NTDB_id=705957 NKJ47_RS15595 WP_242082206.1 3759183..3760568(-) (radA) [Xanthomonas sacchari strain DD13]
MAKAKTAYVCGECGAEYTKWQGQCTECGAWNTLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=705957 NKJ47_RS15595 WP_242082206.1 3759183..3760568(-) (radA) [Xanthomonas sacchari strain DD13]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAATGCGGCGCCGAGTACACCAAGTGGCAGGGCCAGTGCACCGAATG
CGGCGCCTGGAACACGCTGAGCGAGATCGTGCTGGAAAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAGGGCGCGGTGGTGCTGATCGGCGGCGATCCGGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACCCTGCCGGTGCTGTACGTGACAGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAATGCGCTGGCCGAGACCGGCATC
GAACACATCCTGCAGCACGCCAGCGCGGCGCGGCCCAAGCTGATCGTCGCCGACTCGGTGCAGACCCTGTGGACCGAGGC
GCTGACCGCCGCGCCCGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTATGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGTTGTACTTCGAGGGCGAGAGCGGCAGCCGTTTCCGCCTGCTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGA
GCTGGGCGTGTTCGCGATGGGCGAGAAGGGCCTGAAGGAAGTCTCCAATCCGTCGGCGATCTTCCTCTCCGGCGGCAGTG
CGCACCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGACGCGTGGCGGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCTGTGCTGCA
CCGCCATGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCGGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAACGGCGAGGACCGGCTGCGCGAGGCCGCCACGCATGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCACGGTCAAGGGCATGGAGGTGATCGCAGTGGAGCGCCTGGCGC
AGGCGCTGGAAGCGGCGAGCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.024

100

0.49
  radA Streptococcus mitis SK321

43.355

99.566

0.432
  radA Streptococcus pneumoniae D39

42.888

99.132

0.425
  radA Streptococcus pneumoniae TIGR4

42.888

99.132

0.425
  radA Streptococcus mitis NCTC 12261

42.888

99.132

0.425
  radA Streptococcus pneumoniae R6

42.888

99.132

0.425
  radA Streptococcus pneumoniae Rx1

42.888

99.132

0.425