Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NKJ47_RS13935 Genome accession   NZ_CP100647
Coordinates   3347045..3347566 (-) Length   173 a.a.
NCBI ID   WP_209031722.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain DD13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3342045..3352566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKJ47_RS13935 ssb 3347045..3347566 (-) 522 WP_209031722.1 single-stranded DNA-binding protein Machinery gene
  NKJ47_RS13940 - 3347848..3348846 (+) 999 WP_254458454.1 polyprenyl synthetase family protein -
  NKJ47_RS13945 - 3348861..3349124 (+) 264 WP_254458455.1 helix-hairpin-helix domain-containing protein -
  NKJ47_RS13950 - 3349393..3350196 (-) 804 WP_254458456.1 dienelactone hydrolase family protein -
  NKJ47_RS13955 murD 3350446..3351882 (-) 1437 WP_254458457.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18606.54 Da        Isoelectric Point: 5.3243

>NTDB_id=705955 NKJ47_RS13935 WP_209031722.1 3347045..3347566(-) (ssb) [Xanthomonas sacchari strain DD13]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGQDYAPRRQQPAPQQS
APMDDFADDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=705955 NKJ47_RS13935 WP_209031722.1 3347045..3347566(-) (ssb) [Xanthomonas sacchari strain DD13]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGGATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACCAGCAGGAACGCACCGAATGGC
ATCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGATATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGTGGCGGCGGCATGGGCGGTGGCGACCGTCCGCAGCGCTCGGCGCCGCCGCGCCAGG
AGCGTTCCGGCATGGGCGGTGGCGGTGGTGGCGGGCAGGACTATGCCCCGCGCCGGCAGCAGCCGGCGCCGCAGCAGTCC
GCGCCGATGGACGACTTCGCGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.681

100

0.486
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.474
  ssb Neisseria meningitidis MC58

46.023

100

0.468
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.468