Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   FGCSD_RS07760 Genome accession   NZ_AP018726
Coordinates   1550744..1551451 (-) Length   235 a.a.
NCBI ID   WP_129556017.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545744..1556451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS07735 (FGCSD_1499) pstB 1545831..1546583 (-) 753 WP_129556012.1 phosphate ABC transporter ATP-binding protein PstB -
  FGCSD_RS07740 (FGCSD_1500) pstA 1546585..1547400 (-) 816 WP_129556013.1 phosphate ABC transporter permease PstA -
  FGCSD_RS07745 (FGCSD_1501) pstC 1547393..1548256 (-) 864 WP_129556014.1 phosphate ABC transporter permease subunit PstC -
  FGCSD_RS07750 (FGCSD_1502) - 1548373..1549248 (-) 876 WP_129556015.1 substrate-binding domain-containing protein -
  FGCSD_RS07755 (FGCSD_1503) - 1549415..1550743 (-) 1329 WP_129556016.1 ATP-binding protein -
  FGCSD_RS07760 (FGCSD_1504) vicR 1550744..1551451 (-) 708 WP_129556017.1 response regulator transcription factor Regulator
  FGCSD_RS07765 (FGCSD_1505) - 1551538..1552014 (-) 477 WP_172596022.1 cupin domain-containing protein -
  FGCSD_RS11095 (FGCSD_1506) - 1552195..1552344 (+) 150 WP_172595995.1 SPJ_0845 family protein -
  FGCSD_RS07770 (FGCSD_1507) - 1552497..1553399 (+) 903 WP_129556019.1 permease -
  FGCSD_RS07775 (FGCSD_1508) - 1553399..1554214 (+) 816 WP_003060657.1 TIGR03943 family protein -
  FGCSD_RS07780 (FGCSD_1509) ftsY 1554340..1555890 (-) 1551 WP_129556020.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27507.70 Da        Isoelectric Point: 5.4461

>NTDB_id=70590 FGCSD_RS07760 WP_129556017.1 1550744..1551451(-) (vicR) [Streptococcus dysgalactiae strain Kdys0611]
MTKQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIEVCKRLRAKGIKTPIMMV
SAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTSKEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLS
LTPKEFELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKEL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=70590 FGCSD_RS07760 WP_129556017.1 1550744..1551451(-) (vicR) [Streptococcus dysgalactiae strain Kdys0611]
ATGACAAAACAAATCTTATTAGTGGATGATGAAGAACACATTTTGAGGCTACTGGATTATCATCTCAGTAAAGAGGGGTT
TTCCACACAATTGGTAACAGATGGCCGAAAAGCATTGACATTGGCAGAAACAGAGCCTTTTGATTTTATCCTACTGGATA
TTATGTTGCCTCAGTTAGACGGCATAGAAGTATGTAAGCGACTGAGAGCTAAAGGAATAAAAACCCCGATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGATAAGGTTTTGGCCTTAGAATTAGGAGCTGATGATTACCTGACAAAACCTTTTAGCCC
CAGGGAATTAGTGGCGCGTGTCAAGGCTATTTTACGTCGAACCAGTAAAGAGCAGCAAGAAGATGACACAGATGATTTCA
GGGATGATTATCGGGTATTTGGGGCCCTGACCGTCTATCCAGACCGGCATGAGGTTTATAAGGCAGATCATTTATTGAGC
CTTACCCCAAAGGAATTTGAACTCTTGCTCTATCTTATGAAGCATCCCAACATGACCTTAACTAGGGAACGTTTACTTGA
ACGGATTTGGGGATATGATTTTGGACAAGAAACCCGTTTAGTGGATGTTCATATTGGCAAATTGAGAGATAAGATAGAGG
ATAACCCTAAAGACCCTCAATTTATTCAAACGATTAGAGGCTATGGGTATAAGTTTAAGGAGTTATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

48.718

99.574

0.485
  micA Streptococcus pneumoniae Cp1015

47.619

98.298

0.468
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.35

100

0.417
  covR Streptococcus salivarius strain HSISS4

40.084

100

0.404

Multiple sequence alignment