Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   OK783_RS09840 Genome accession   NZ_CP115654
Coordinates   1882151..1883194 (+) Length   347 a.a.
NCBI ID   WP_157147413.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   pseudopilus biogenesis (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877151..1888194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS09815 (OK783_09815) - 1879382..1879516 (-) 135 WP_258076284.1 hypothetical protein -
  OK783_RS09820 (OK783_09820) dksA 1879531..1879947 (-) 417 WP_003692108.1 RNA polymerase-binding protein DksA -
  OK783_RS09825 (OK783_09825) proC 1880098..1880889 (-) 792 WP_003694504.1 pyrroline-5-carboxylate reductase -
  OK783_RS09830 (OK783_09830) - 1880938..1881345 (-) 408 WP_003690202.1 hypothetical protein -
  OK783_RS09835 (OK783_09835) - 1881345..1882031 (-) 687 WP_003690201.1 YggS family pyridoxal phosphate-dependent enzyme -
  OK783_RS09840 (OK783_09840) pilT 1882151..1883194 (+) 1044 WP_157147413.1 type IV pilus twitching motility protein PilT Machinery gene
  OK783_RS09845 (OK783_09845) pilU 1883358..1884584 (+) 1227 WP_003692100.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  OK783_RS09850 (OK783_09850) yccS 1884701..1886851 (+) 2151 WP_157147414.1 YccS family putative transporter -
  OK783_RS09855 (OK783_09855) - 1887333..1887617 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37998.40 Da        Isoelectric Point: 7.0893

>NTDB_id=705838 OK783_RS09840 WP_157147413.1 1882151..1883194(+) (pilT) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSAEEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVAR
FRVNAFNTGRGPAAVFRTIPSTVLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIED
PIEFVHQSKKSLINQRELHQHTLSFANALSSALREDPDVILVGEMRDPETIGLALTAAETGHLVFGTLHTTGAAKTVDRI
VDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNGRVASHEILIANPAVRNLIRENKITQINSVLQTGRASGMQTMDQS
LQSLVRQGLIAPEATRRRAQNSESMSF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=705838 OK783_RS09840 WP_157147413.1 1882151..1883194(+) (pilT) [Neisseria gonorrhoeae strain FA1090 N-1-60]
ATGCAGATTACCGACTTACTCGCCTTCGGCGCTAAAAACAAAGCATCCGACCTTCACCTGAGTTCGGGCATATCCCCTAT
GATTCGGGTTCACGGCGACATGCGGCGCATCAACCTTCCCGAAATGAGCGCGGAAGAGGTCGGCAATATGGTAACTTCGG
TGATGAACGACCACCAGCGGAAAATCTACCAGCAAAACTTGGAAGTCGACTTCTCGTTCGAACTGCCCAACGTCGCCCGA
TTCCGCGTCAACGCCTTCAACACCGGCCGCGGCCCCGCCGCCGTATTCCGCACCATTCCCAGCACCGTCTTATCGCTGGA
AGAATTGAAAGCCCCGAGCATTTTCCAAAAAATCGCAGAATCGCCGCGCGGCATGGTATTGGTTACCGGCCCTACCGGTT
CGGGCAAATCGACCACGCTTGCCGCGATGATCAACTACATCAACGAAACCCAGCCGGCACACATCCTGACCATCGAAGAC
CCGATCGAATTCGTCCACCAAAGCAAAAAATCCCTGATTAACCAACGCGAGCTGCACCAGCACACCCTCAGCTTCGCCAA
CGCGCTGAGTTCCGCATTGCGCGAAGACCCCGACGTTATCCTTGTCGGCGAGATGCGCGACCCCGAAACCATCGGCTTGG
CACTGACCGCCGCCGAAACCGGACACTTGGTTTTCGGCACGCTGCACACGACCGGCGCGGCAAAAACCGTCGACCGTATC
GTGGACGTATTCCCCGCCGGAGAGAAAGAAATGGTGCGTTCCATGCTGTCCGAATCGCTGACCGCCGTCATCTCCCAAAA
CCTGCTGAAAACGCACGACGGCAACGGCCGTGTCGCCTCGCACGAAATCCTGATTGCCAACCCCGCCGTCCGCAACCTCA
TCCGCGAAAACAAAATCACGCAGATTAACTCCGTCCTGCAAACCGGGCGGGCGAGCGGTATGCAGACGATGGACCAATCG
CTGCAATCGCTGGTGCGCCAAGGGCTGATCGCACCGGAAGCCACACGCAGACGCGCGCAAAACAGCGAAAGTATGAGTTT
CTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(12-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Neisseria gonorrhoeae MS11

99.424

100

0.994
  pilT Neisseria meningitidis 8013

98.559

100

0.986
  pilT Acinetobacter baumannii D1279779

67.536

99.424

0.671
  pilT Acinetobacter baumannii strain A118

67.536

99.424

0.671
  pilT Acinetobacter nosocomialis M2

67.536

99.424

0.671
  pilT Acinetobacter baylyi ADP1

66.957

99.424

0.666
  pilT Pseudomonas stutzeri DSM 10701

66.667

99.424

0.663
  pilT Pseudomonas aeruginosa PAK

66.087

99.424

0.657
  pilT Legionella pneumophila strain Lp02

63.93

98.271

0.628
  pilT Legionella pneumophila strain ERS1305867

63.93

98.271

0.628
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

64.242

95.101

0.611
  pilT Vibrio cholerae strain A1552

64.242

95.101

0.611
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.392

97.695

0.522
  pilU Pseudomonas stutzeri DSM 10701

40

99.424

0.398
  pilU Acinetobacter baylyi ADP1

40

93.66

0.375
  pilU Vibrio cholerae strain A1552

39.692

93.66

0.372