Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NLZ06_RS20470 Genome accession   NZ_CP100544
Coordinates   4268750..4269286 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain LH09-a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4263750..4274286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ06_RS20450 (NLZ06_20450) soxR 4265478..4265942 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NLZ06_RS20455 (NLZ06_20455) soxS 4266028..4266351 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NLZ06_RS20460 (NLZ06_20460) pdeC 4266354..4267940 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  NLZ06_RS20465 (NLZ06_20465) yjcB 4268370..4268651 (+) 282 WP_001341690.1 YjcB family protein -
  NLZ06_RS20470 (NLZ06_20470) ssb 4268750..4269286 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NLZ06_RS20475 (NLZ06_20475) uvrA 4269540..4272362 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  NLZ06_RS20480 (NLZ06_20480) yjbR 4272397..4272753 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NLZ06_RS20485 (NLZ06_20485) yjbQ 4272757..4273173 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NLZ06_RS20490 (NLZ06_20490) aphA 4273284..4273997 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=705807 NLZ06_RS20470 WP_000168305.1 4268750..4269286(-) (ssb) [Escherichia coli strain LH09-a]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=705807 NLZ06_RS20470 WP_000168305.1 4268750..4269286(-) (ssb) [Escherichia coli strain LH09-a]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489