Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NLZ15_RS20555 Genome accession   NZ_CP100494
Coordinates   4326169..4326705 (-) Length   178 a.a.
NCBI ID   WP_125294737.1    Uniprot ID   A0A427URS9
Organism   Atlantibacter subterranea strain LH84-a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4321169..4331705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ15_RS20535 (NLZ15_20535) - 4321411..4323015 (-) 1605 WP_254487313.1 EAL domain-containing protein -
  NLZ15_RS22775 - 4323304..4324701 (-) 1398 WP_151603163.1 sensor domain-containing diguanylate cyclase -
  NLZ15_RS20545 (NLZ15_20545) - 4325271..4325549 (+) 279 WP_254487315.1 YjcB family protein -
  NLZ15_RS20550 (NLZ15_20550) - 4325582..4325926 (-) 345 WP_254487317.1 hypothetical protein -
  NLZ15_RS20555 (NLZ15_20555) ssb 4326169..4326705 (-) 537 WP_125294737.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NLZ15_RS20560 (NLZ15_20560) uvrA 4326966..4329800 (+) 2835 WP_125294738.1 excinuclease ABC subunit UvrA -
  NLZ15_RS20565 (NLZ15_20565) - 4329801..4330154 (-) 354 WP_125294739.1 MmcQ/YjbR family DNA-binding protein -
  NLZ15_RS20575 (NLZ15_20575) aphA 4330413..4331126 (-) 714 WP_125294740.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19333.35 Da        Isoelectric Point: 5.2358

>NTDB_id=705599 NLZ15_RS20555 WP_125294737.1 4326169..4326705(-) (ssb) [Atlantibacter subterranea strain LH84-a]
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQQQPQGGQFSGGAQSRPQQQA
PAQSNNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=705599 NLZ15_RS20555 WP_125294737.1 4326169..4326705(-) (ssb) [Atlantibacter subterranea strain LH84-a]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTATTTGCCGAGTGG
CGGCGCAGTCGCTAACTTCACGCTGGCTACCTCCGACTCCTGGCGCGACAAGCAGACCGGCGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGATGTTCGGCAAACTGGCGGAAGTCGCCGGTGAATATCTGCGTAAAGGCTCACAGGTCTATATT
GAAGGCCAGTTGCGTACCCGCAAATGGACCGATCAGTCCGGCCAGGAGCGTTACACCACCGAGATTAACGTTCCGCAAAT
TGGCGGCGTTATGCAGATGTTGGGTGGACGCCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGG
GCCAGCCTCAGCAACCGCAGCAGCAGCCTCAGGGCGGCCAGTTCAGCGGCGGCGCGCAATCACGTCCGCAGCAGCAGGCT
CCGGCGCAGTCTAACAATGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427URS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.678

100

0.747
  ssb Glaesserella parasuis strain SC1401

55.435

100

0.573
  ssb Neisseria gonorrhoeae MS11

46.995

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.472