Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NLZ15_RS02020 Genome accession   NZ_CP100494
Coordinates   411696..412817 (+) Length   373 a.a.
NCBI ID   WP_254487585.1    Uniprot ID   -
Organism   Atlantibacter subterranea strain LH84-a     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 406696..417817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ15_RS01995 (NLZ15_01995) mscL 406768..407181 (-) 414 WP_254487582.1 large-conductance mechanosensitive channel protein MscL -
  NLZ15_RS02000 (NLZ15_02000) trkA 407322..408698 (-) 1377 WP_125295722.1 Trk system potassium transporter TrkA -
  NLZ15_RS02005 (NLZ15_02005) rsmB 408734..410026 (-) 1293 WP_254487583.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NLZ15_RS02010 (NLZ15_02010) fmt 410087..411034 (-) 948 WP_254487584.1 methionyl-tRNA formyltransferase -
  NLZ15_RS02015 (NLZ15_02015) def 411059..411565 (-) 507 WP_125295725.1 peptide deformylase -
  NLZ15_RS02020 (NLZ15_02020) dprA 411696..412817 (+) 1122 WP_254487585.1 DNA-protecting protein DprA Machinery gene
  NLZ15_RS02025 (NLZ15_02025) smg 412789..413262 (+) 474 WP_125295727.1 DUF494 family protein Smg -
  NLZ15_RS02030 (NLZ15_02030) - 413288..413839 (+) 552 WP_125295728.1 type I DNA topoisomerase -
  NLZ15_RS02035 (NLZ15_02035) tsaC 413832..414404 (+) 573 WP_254487586.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  NLZ15_RS02040 (NLZ15_02040) aroE 414409..415227 (+) 819 WP_254487587.1 shikimate dehydrogenase -
  NLZ15_RS02045 (NLZ15_02045) - 415224..415481 (+) 258 WP_254487588.1 DUF1488 domain-containing protein -
  NLZ15_RS02050 (NLZ15_02050) - 415457..416011 (-) 555 WP_125295732.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40515.67 Da        Isoelectric Point: 6.3399

>NTDB_id=705585 NLZ15_RS02020 WP_254487585.1 411696..412817(+) (dprA) [Atlantibacter subterranea strain LH84-a]
MPLTEIWLRLMAVASLNGEQMLNAVKHLQRHPCEPALALAAVPLSASQIQQFLSVGMTDIERALNWLEQPGHRLLTADMP
LYPPLLRTIDWFPGALLIAGNVDALTTPQLAVVGSRAHSWYGEHWGRYFCEILANLGMTITSGLALGIDGVAHRAALNMK
GTTIAVLGSGLEQLYPKRHKRLADEIVAKGGALVSEFPLNMKPWQSNFPRRNRIISGLSHGVLVVEATQRSGSLVTARCA
LEQGREVFALPGPISNPGASGPHWLIQQGATLVTSPEEILTYLQSDLQWLSSLDVANYSPNEEEGALPFPELLANVGDEV
TPVDVVAERAGQPVPETVTQLLELELAGWIAAVPGGYVRLRRAGHVRRTNVFV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=705585 NLZ15_RS02020 WP_254487585.1 411696..412817(+) (dprA) [Atlantibacter subterranea strain LH84-a]
ATGCCGCTTACTGAGATTTGGTTGCGTTTAATGGCGGTTGCCAGCCTGAATGGCGAACAGATGCTTAATGCAGTAAAACA
TTTGCAGCGTCATCCTTGCGAACCCGCACTGGCTTTGGCCGCCGTGCCGCTGTCGGCTTCACAAATTCAGCAATTCTTAT
CGGTTGGCATGACTGACATTGAACGCGCCCTTAACTGGCTTGAGCAGCCTGGGCACCGCTTATTAACCGCAGATATGCCC
CTGTATCCACCGTTGCTTAGAACGATTGACTGGTTTCCCGGCGCGCTGTTGATTGCCGGCAATGTCGATGCGTTAACCAC
ACCGCAGCTTGCCGTAGTAGGCAGCCGCGCGCATTCATGGTACGGCGAACATTGGGGACGGTATTTTTGTGAAATCCTGG
CTAACCTGGGCATGACGATCACCAGCGGGCTGGCGTTAGGGATTGATGGCGTGGCTCATCGCGCGGCGCTCAATATGAAA
GGGACCACCATTGCCGTGCTCGGCAGCGGCTTGGAGCAACTCTACCCTAAAAGACACAAGCGGCTGGCTGACGAGATCGT
TGCCAAAGGCGGCGCACTGGTTAGTGAGTTCCCGCTCAACATGAAGCCCTGGCAAAGCAACTTTCCCAGACGAAATCGCA
TTATTAGCGGATTGAGCCATGGCGTATTGGTGGTTGAGGCCACGCAGCGCAGCGGTTCTTTGGTTACCGCACGCTGCGCC
CTTGAACAGGGCCGGGAAGTTTTTGCGCTGCCGGGCCCGATCAGCAATCCTGGGGCAAGCGGGCCACACTGGCTGATTCA
GCAGGGTGCTACGCTGGTCACTTCTCCCGAAGAGATCCTTACGTATTTGCAAAGCGATCTCCAATGGCTGTCTTCTCTGG
ATGTCGCAAATTATTCACCAAATGAAGAGGAGGGCGCATTGCCATTTCCCGAGCTGTTGGCTAACGTAGGAGATGAGGTT
ACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGACAGTAACCCAATTACTCGAACTGGAGTTAGC
AGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTAAGGAGGGCAGGCCATGTTCGACGTACTAATGTATTTGTTT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (DprA_WH)

(311-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

49.451

97.587

0.483
  dprA Vibrio cholerae strain A1552

51.466

82.306

0.424
  dprA Glaesserella parasuis strain SC1401

46.407

89.544

0.416
  dprA Haemophilus influenzae Rd KW20

45.133

90.885

0.41
  dprA Legionella pneumophila strain ERS1305867

46.026

80.965

0.373