Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   FGCSD_RS00355 Genome accession   NZ_AP018726
Coordinates   71267..72487 (+) Length   406 a.a.
NCBI ID   WP_129555130.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 66267..77487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS00340 (FGCSD_0067) - 69220..70242 (+) 1023 WP_172595963.1 IS30 family transposase -
  FGCSD_RS00350 (FGCSD_0068) rlmH 70578..71057 (-) 480 WP_129555129.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FGCSD_RS00355 (FGCSD_0069) htrA 71267..72487 (+) 1221 WP_129555130.1 trypsin-like peptidase domain-containing protein Regulator
  FGCSD_RS00360 (FGCSD_0070) spo0J 72603..73376 (+) 774 WP_129555131.1 ParB/RepB/Spo0J family partition protein Regulator
  FGCSD_RS00365 (FGCSD_0071) dnaA 73610..74965 (+) 1356 WP_129555132.1 chromosomal replication initiator protein DnaA -
  FGCSD_RS00370 (FGCSD_0073) dnaN 75119..76255 (+) 1137 WP_111714625.1 DNA polymerase III subunit beta -
  FGCSD_RS00375 (FGCSD_0074) - 76329..76526 (+) 198 WP_129555133.1 DUF951 family protein -
  FGCSD_RS00380 (FGCSD_0075) - 76651..77025 (+) 375 WP_129555134.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 406 a.a.        Molecular weight: 42440.79 Da        Isoelectric Point: 5.0584

>NTDB_id=70554 FGCSD_RS00355 WP_129555130.1 71267..72487(+) (htrA) [Streptococcus dysgalactiae strain Kdys0611]
MPSMKHILKSLGILLIGFLGGLLAIFTFNATQQSSSTSHTGSATTSKMVFNNTTDTTKAVKVVQNAVVSVINYQADPSSS
LSNPYTKLFGEDQTRENKDADLAIFSEGSGVIYRKDGDSAYVVTNNHVIDGAKRIEILMADGTKVVGELVGADTYSDLAV
VKIASDKIKTVAEFADSTKLNVGEVAIAIGSPLGTQYANSVTEGIVSSLSRTVTLKNEDGETVSTNAIQTDAAINPGNSG
GPLINIEGQVIGINSSKISSTPTGSNGNSGAVEGIGFAIPSSDVIKIIKQLETNGEVIRPALGISMVNLNDLSTNALSQI
NIPTGVTGGIVVASVQDGMPASGKLAQYDVITEIDGKAVNSISDLQSNLYGHDINDTIKVTFYRGTTKKKADITLTKTTQ
DLTKKQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=70554 FGCSD_RS00355 WP_129555130.1 71267..72487(+) (htrA) [Streptococcus dysgalactiae strain Kdys0611]
ATGCCATCTATGAAACATATCTTAAAATCCTTAGGCATTTTACTCATTGGATTTTTAGGAGGATTGTTAGCAATTTTCAC
CTTTAATGCTACTCAACAGTCTTCCTCTACCTCACATACTGGTAGTGCGACGACGAGTAAGATGGTTTTTAATAATACTA
CTGACACAACAAAAGCGGTTAAAGTCGTTCAAAATGCAGTAGTATCAGTGATTAACTATCAAGCAGATCCTTCTTCATCT
CTTTCAAATCCCTACACAAAACTCTTTGGTGAAGATCAAACAAGAGAAAATAAAGATGCCGACTTAGCAATTTTTAGTGA
AGGTTCTGGTGTTATTTATCGAAAAGACGGTGATTCTGCATATGTTGTTACTAATAATCACGTCATTGACGGCGCAAAGC
GAATTGAAATTCTTATGGCAGACGGTACCAAAGTCGTAGGGGAGTTAGTTGGAGCTGATACTTACTCTGACTTAGCGGTT
GTTAAAATTGCCTCAGATAAAATTAAGACAGTTGCTGAATTTGCAGATTCTACTAAACTGAATGTCGGAGAAGTTGCTAT
CGCAATTGGTAGCCCATTAGGAACTCAGTATGCCAATTCTGTTACAGAAGGAATTGTTTCTAGTCTCAGTCGTACCGTCA
CCTTAAAAAATGAAGATGGGGAAACTGTTTCAACAAATGCCATTCAAACTGATGCTGCAATCAATCCCGGAAATTCTGGT
GGTCCGCTCATCAATATTGAAGGACAGGTTATTGGTATCAATTCAAGTAAAATTTCTTCTACCCCAACAGGAAGCAACGG
CAATAGTGGAGCGGTTGAGGGTATCGGTTTTGCTATTCCATCCAGTGATGTCATTAAAATCATTAAGCAATTAGAAACCA
ATGGTGAGGTTATCCGACCTGCCCTTGGAATCTCTATGGTTAATCTAAATGATTTATCAACGAATGCTCTCAGTCAAATT
AATATCCCTACTGGGGTGACGGGTGGTATTGTGGTCGCTTCTGTTCAAGATGGAATGCCAGCTAGTGGTAAACTTGCCCA
GTACGACGTTATTACTGAAATTGATGGTAAAGCCGTCAACTCAATCAGTGATCTTCAAAGCAACCTATATGGCCATGACA
TTAACGATACCATCAAGGTAACCTTTTATAGAGGGACAACCAAGAAAAAAGCAGATATTACCTTAACTAAAACAACCCAG
GATTTGACCAAAAAGCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

60.945

99.015

0.603

  htrA Streptococcus mitis NCTC 12261

54.657

100

0.549

  htrA Streptococcus pneumoniae Rx1

54.657

100

0.549

  htrA Streptococcus pneumoniae TIGR4

54.657

100

0.549

  htrA Streptococcus pneumoniae D39

54.657

100

0.549

  htrA Streptococcus pneumoniae R6

54.657

100

0.549

  htrA Streptococcus gordonii str. Challis substr. CH1

54.703

99.507

0.544


Multiple sequence alignment