Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NLK52_RS20525 Genome accession   NZ_CP100436
Coordinates   4013783..4014301 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain MEC_B298     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4008783..4019301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS20495 (NLK52_20495) yyaJ 4009291..4010646 (+) 1356 WP_015483979.1 MFS transporter -
  NLK52_RS20500 (NLK52_20500) maa 4010680..4011234 (-) 555 WP_015385213.1 sugar O-acetyltransferase -
  NLK52_RS20505 (NLK52_20505) yyaH 4011250..4011630 (-) 381 WP_015483980.1 VOC family protein -
  NLK52_RS20510 (NLK52_20510) ccpB 4011686..4012618 (-) 933 WP_015385215.1 transcriptional regulator CcpB -
  NLK52_RS20515 (NLK52_20515) xth 4012677..4013435 (-) 759 WP_015385216.1 exodeoxyribonuclease III -
  NLK52_RS20520 (NLK52_20520) rpsR 4013500..4013739 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NLK52_RS20525 (NLK52_20525) ssbA 4013783..4014301 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NLK52_RS20530 (NLK52_20530) rpsF 4014342..4014629 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  NLK52_RS20535 (NLK52_20535) ychF 4014740..4015840 (-) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  NLK52_RS20540 (NLK52_20540) yyaE 4015967..4017970 (-) 2004 WP_015385219.1 molybdopterin-dependent oxidoreductase -
  NLK52_RS20545 (NLK52_20545) yyzM 4018021..4018227 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=705469 NLK52_RS20525 WP_003219228.1 4013783..4014301(-) (ssbA) [Bacillus subtilis strain MEC_B298]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=705469 NLK52_RS20525 WP_003219228.1 4013783..4014301(-) (ssbA) [Bacillus subtilis strain MEC_B298]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAACGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378