Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NLK52_RS12165 Genome accession   NZ_CP100436
Coordinates   2377958..2378389 (-) Length   143 a.a.
NCBI ID   WP_015384089.1    Uniprot ID   -
Organism   Bacillus subtilis strain MEC_B298     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2372958..2383389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS12115 (NLK52_12115) sinI 2373153..2373326 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NLK52_RS12120 (NLK52_12120) sinR 2373360..2373695 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NLK52_RS12125 (NLK52_12125) tasA 2373788..2374573 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  NLK52_RS12130 (NLK52_12130) sipW 2374637..2375209 (-) 573 WP_080030740.1 signal peptidase I SipW -
  NLK52_RS12135 (NLK52_12135) tapA 2375193..2375954 (-) 762 WP_015384085.1 amyloid fiber anchoring/assembly protein TapA -
  NLK52_RS12140 (NLK52_12140) yqzG 2376224..2376550 (+) 327 WP_015384086.1 YqzG/YhdC family protein -
  NLK52_RS12145 (NLK52_12145) spoIITA 2376592..2376771 (-) 180 WP_003230176.1 YqzE family protein -
  NLK52_RS12150 (NLK52_12150) comGG 2376843..2377217 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NLK52_RS12155 (NLK52_12155) comGF 2377218..2377601 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  NLK52_RS12160 (NLK52_12160) comGE 2377627..2377974 (-) 348 WP_015384088.1 ComG operon protein 5 Machinery gene
  NLK52_RS12165 (NLK52_12165) comGD 2377958..2378389 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  NLK52_RS12170 (NLK52_12170) comGC 2378379..2378675 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  NLK52_RS12175 (NLK52_12175) comGB 2378689..2379726 (-) 1038 WP_015483430.1 comG operon protein ComGB Machinery gene
  NLK52_RS12180 (NLK52_12180) comGA 2379713..2380783 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  NLK52_RS12185 (NLK52_12185) corA 2381193..2382146 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16064.60 Da        Isoelectric Point: 9.6754

>NTDB_id=705436 NLK52_RS12165 WP_015384089.1 2377958..2378389(-) (comGD) [Bacillus subtilis strain MEC_B298]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=705436 NLK52_RS12165 WP_015384089.1 2377958..2378389(-) (comGD) [Bacillus subtilis strain MEC_B298]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTATCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979