Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   NLY76_RS07835 Genome accession   NZ_CP100430
Coordinates   1615925..1616569 (+) Length   214 a.a.
NCBI ID   WP_002942854.1    Uniprot ID   A0A0M9FM24
Organism   Streptococcus suis strain LSS42     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1610925..1621569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS07810 (NLY76_07810) - 1611588..1612925 (-) 1338 WP_002942867.1 hemolysin family protein -
  NLY76_RS07815 (NLY76_07815) - 1613058..1613837 (+) 780 WP_044770250.1 ABC transporter ATP-binding protein -
  NLY76_RS07820 (NLY76_07820) - 1613849..1614403 (-) 555 WP_044692286.1 class I SAM-dependent methyltransferase -
  NLY76_RS07825 (NLY76_07825) - 1614413..1614931 (-) 519 WP_002942861.1 TetR/AcrR family transcriptional regulator -
  NLY76_RS07830 (NLY76_07830) - 1615053..1615871 (+) 819 WP_002942859.1 cation diffusion facilitator family transporter -
  NLY76_RS07835 (NLY76_07835) cclA/cilC 1615925..1616569 (+) 645 WP_002942854.1 A24 family peptidase Machinery gene
  NLY76_RS07840 (NLY76_07840) - 1616677..1618137 (+) 1461 WP_044684097.1 nicotinate phosphoribosyltransferase -
  NLY76_RS07845 (NLY76_07845) nadE 1618150..1618974 (+) 825 WP_044675081.1 ammonia-dependent NAD(+) synthetase -
  NLY76_RS07850 (NLY76_07850) trpB 1619228..1620403 (-) 1176 WP_044770249.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24144.21 Da        Isoelectric Point: 8.4760

>NTDB_id=705219 NLY76_RS07835 WP_002942854.1 1615925..1616569(+) (cclA/cilC) [Streptococcus suis strain LSS42]
MKTIILFFLGASIGSFLGLVIDRFPEQSIISPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEVLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQVSIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=705219 NLY76_RS07835 WP_002942854.1 1615925..1616569(+) (cclA/cilC) [Streptococcus suis strain LSS42]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCCAGTCACTGCAATGCCTGCAAGCGACGACTCAAGGCCTGGGACCTAATACCCATCCTGTCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAAGTCTTAGCTGGT
CTAGTCGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGCTAGTTTTAACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAGTCAGTATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M9FM24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.528

99.065

0.491
  cclA/cilC Streptococcus pneumoniae Rx1

48.113

99.065

0.477
  cclA/cilC Streptococcus pneumoniae D39

48.113

99.065

0.477
  cclA/cilC Streptococcus pneumoniae R6

48.113

99.065

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

47.17

99.065

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

45.283

99.065

0.449