Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NLY76_RS03490 Genome accession   NZ_CP100430
Coordinates   721510..722451 (+) Length   313 a.a.
NCBI ID   WP_044757881.1    Uniprot ID   A0A0Z8KGU9
Organism   Streptococcus suis strain LSS42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716510..727451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS03475 (NLY76_03475) - 717362..718399 (-) 1038 WP_015646698.1 3-deoxy-7-phosphoheptulonate synthase -
  NLY76_RS03480 (NLY76_03480) - 718700..719293 (-) 594 WP_015646699.1 DUF1361 domain-containing protein -
  NLY76_RS03485 (NLY76_03485) metG 719446..721449 (+) 2004 WP_044770143.1 methionine--tRNA ligase -
  NLY76_RS03490 (NLY76_03490) coiA 721510..722451 (+) 942 WP_044757881.1 competence protein CoiA Machinery gene
  NLY76_RS03495 (NLY76_03495) pepF 722681..724483 (+) 1803 WP_024382905.1 oligoendopeptidase F Regulator
  NLY76_RS03500 (NLY76_03500) - 724485..724922 (+) 438 WP_024413710.1 hypothetical protein -
  NLY76_RS03505 (NLY76_03505) - 724944..725492 (+) 549 WP_044676683.1 DUF6630 family protein -
  NLY76_RS03510 (NLY76_03510) - 725567..726286 (+) 720 WP_044676761.1 O-methyltransferase -
  NLY76_RS03515 (NLY76_03515) prsA 726348..727328 (+) 981 WP_044757882.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36216.78 Da        Isoelectric Point: 7.8956

>NTDB_id=705209 NLY76_RS03490 WP_044757881.1 721510..722451(+) (coiA) [Streptococcus suis strain LSS42]
MLVALDEDGQVFNVLEHPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLSPVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=705209 NLY76_RS03490 WP_044757881.1 721510..722451(+) (coiA) [Streptococcus suis strain LSS42]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAACATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAAGTCCAGTCTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8KGU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

41.25

100

0.422