Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L4174_RS01660 Genome accession   NZ_CP100425
Coordinates   363851..364384 (+) Length   177 a.a.
NCBI ID   WP_248143856.1    Uniprot ID   -
Organism   Photobacterium sp. CCB-ST2H9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 358851..369384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4174_RS01650 (L4174_001650) - 358905..360683 (-) 1779 WP_248143854.1 PglL family O-oligosaccharyltransferase -
  L4174_RS01655 (L4174_001655) uvrA 360755..363601 (-) 2847 WP_248143855.1 excinuclease ABC subunit UvrA -
  L4174_RS01660 (L4174_001660) ssb 363851..364384 (+) 534 WP_248143856.1 single-stranded DNA-binding protein Machinery gene
  L4174_RS01665 (L4174_001665) - 364518..365402 (-) 885 WP_248143857.1 LysR family transcriptional regulator -
  L4174_RS01670 (L4174_001670) csrD 365604..367547 (+) 1944 WP_248143858.1 RNase E specificity factor CsrD -
  L4174_RS01675 (L4174_001675) - 367709..369163 (+) 1455 WP_248143859.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19694.75 Da        Isoelectric Point: 4.9269

>NTDB_id=705106 L4174_RS01660 WP_248143856.1 363851..364384(+) (ssb) [Photobacterium sp. CCB-ST2H9]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSETWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRFTTEVVVQGFNGVMQMLGGRQGGQGAPMGGQQQGGWGQPQQPQQQQQQQQSYAPQQQSAPQQS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=705106 L4174_RS01660 WP_248143856.1 363851..364384(+) (ssb) [Photobacterium sp. CCB-ST2H9]
ATGGCCAGTCGTGGCGTGAATAAAGTTATCCTGGTAGGTAACTTAGGCAATGATCCTGAAATCCGTTATATGCCAAACGG
CGGTGCAGTAGCAAATATTACCATTGCTACTTCTGAAACATGGCGTGACAAAGCGACCGGCGAGCAGCGTGAAAAAACTG
AGTGGCACCGTGTTGTGCTGTTCGGCAAGCTGGCTGAAGTTGCTGGTGAGTACCTGCGGAAAGGATCTCAGGTTTATATT
GAAGGTCAGCTGCAAACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTTCACCACTGAAGTTGTGGTTCAGGGCTT
TAACGGTGTGATGCAAATGCTGGGCGGCCGTCAGGGCGGTCAGGGTGCCCCAATGGGTGGTCAGCAGCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAACAGCAGCAACAGCAACAGCAGAGCTATGCGCCGCAGCAACAGTCTGCGCCTCAGCAGTCT
CAGCCTCAGTACAATGAACCACCAATGGATTTCGACGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.57

100

0.836
  ssb Glaesserella parasuis strain SC1401

55.376

100

0.582
  ssb Neisseria meningitidis MC58

47.222

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.328

100

0.463