Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   NLY35_RS08775 Genome accession   NZ_CP100418
Coordinates   1743801..1744445 (+) Length   214 a.a.
NCBI ID   WP_204101556.1    Uniprot ID   -
Organism   Streptococcus suis strain STC104     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1738801..1749445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY35_RS08750 (NLY35_08750) - 1739461..1740798 (-) 1338 WP_004194632.1 hemolysin family protein -
  NLY35_RS08755 (NLY35_08755) - 1740931..1741710 (+) 780 WP_204101553.1 ABC transporter ATP-binding protein -
  NLY35_RS08760 (NLY35_08760) - 1741726..1742280 (-) 555 WP_024417714.1 class I SAM-dependent methyltransferase -
  NLY35_RS08765 (NLY35_08765) - 1742290..1742808 (-) 519 WP_204101554.1 TetR/AcrR family transcriptional regulator -
  NLY35_RS08770 (NLY35_08770) - 1742930..1743748 (+) 819 WP_204101555.1 cation diffusion facilitator family transporter -
  NLY35_RS08775 (NLY35_08775) cclA/cilC 1743801..1744445 (+) 645 WP_204101556.1 A24 family peptidase Machinery gene
  NLY35_RS08780 (NLY35_08780) - 1744499..1745959 (+) 1461 WP_204101557.1 nicotinate phosphoribosyltransferase -
  NLY35_RS08785 (NLY35_08785) nadE 1745972..1746796 (+) 825 WP_204101558.1 ammonia-dependent NAD(+) synthetase -
  NLY35_RS08790 (NLY35_08790) trpB 1747048..1748223 (-) 1176 WP_204101559.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24272.35 Da        Isoelectric Point: 8.7013

>NTDB_id=704985 NLY35_RS08775 WP_204101556.1 1743801..1744445(+) (cclA/cilC) [Streptococcus suis strain STC104]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTIIALLLSQLNWLFCGLLVLAYLTEKWQLNIGSGDFL
YLASLSLLFGFTEILWIIQISSILGLAIFFIFKPKSLPYVPFLFLASLVINITL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=704985 NLY35_RS08775 WP_204101556.1 1743801..1744445(+) (cclA/cilC) [Streptococcus suis strain STC104]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCACCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAAGCCTGGGACCTAATTCCAATTCTTTCTC
AGCTTTCGACAAAGTCCAAATGCCGTTACTGTAAGGCGAAGATCCCTTATTGGTATCTGGGACTGGAATTCTTAGCTGGT
TTAGTCGTTCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGGCTTGTTTTGACCAT
TTATGACATCAAGCATCAGGAATACCCTTTTGCTGTCTGGCTCGTTTTTACTATTATAGCTCTGCTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCCTTTTGGTCCTAGCCTATCTGACTGAAAAATGGCAACTCAATATTGGTTCTGGCGACTTTCTC
TATCTGGCAAGTCTCTCTCTTTTATTTGGTTTTACCGAAATTCTCTGGATTATCCAGATTAGCTCCATCTTGGGACTGGC
TATCTTTTTCATCTTTAAACCCAAATCCCTTCCTTATGTACCTTTTCTATTTTTGGCCAGTCTAGTCATCAATATCACTC
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.763

98.598

0.491
  cclA/cilC Streptococcus pneumoniae Rx1

49.268

95.794

0.472
  cclA/cilC Streptococcus pneumoniae D39

49.268

95.794

0.472
  cclA/cilC Streptococcus pneumoniae R6

49.268

95.794

0.472
  cclA/cilC Streptococcus mitis NCTC 12261

47.867

98.598

0.472
  cclA/cilC Streptococcus pneumoniae TIGR4

47.805

95.794

0.458