Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NLY35_RS07385 Genome accession   NZ_CP100418
Coordinates   1491979..1492782 (-) Length   267 a.a.
NCBI ID   WP_099807080.1    Uniprot ID   -
Organism   Streptococcus suis strain STC104     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486979..1497782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY35_RS07370 (NLY35_07370) recR 1487567..1488163 (-) 597 WP_014637682.1 recombination mediator RecR -
  NLY35_RS07375 (NLY35_07375) pbp2b 1488172..1490244 (-) 2073 WP_024376693.1 penicillin-binding protein PBP2B -
  NLY35_RS07380 (NLY35_07380) vga(F) 1490336..1491721 (-) 1386 WP_254369355.1 ABC-F type ribosomal protection protein Vga(F) -
  NLY35_RS07385 (NLY35_07385) vicX 1491979..1492782 (-) 804 WP_099807080.1 MBL fold metallo-hydrolase Regulator
  NLY35_RS07390 (NLY35_07390) micB 1492789..1494138 (-) 1350 WP_044670912.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NLY35_RS07395 (NLY35_07395) micA 1494131..1494835 (-) 705 WP_204101676.1 response regulator YycF Regulator
  NLY35_RS07400 (NLY35_07400) - 1495029..1495790 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  NLY35_RS07405 (NLY35_07405) - 1495801..1496640 (+) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  NLY35_RS07410 (NLY35_07410) - 1496655..1497353 (+) 699 WP_002935835.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29629.73 Da        Isoelectric Point: 5.7755

>NTDB_id=704979 NLY35_RS07385 WP_099807080.1 1491979..1492782(-) (vicX) [Streptococcus suis strain STC104]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=704979 NLY35_RS07385 WP_099807080.1 1491979..1492782(-) (vicX) [Streptococcus suis strain STC104]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATGTTGAAATCTTGCGTGCGGGTTCTTATTCTTGGAACCTCAA
GCAACGGATTTTGTCTGATAAGGGGCACCTTTGTAACGAGGATGGTGCTGATGCCATGATTCGCTCACTAGGAAATCGGA
CTAAAAAGATTTACCTTGGGCATTTATCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGATACCTCGCCAGATACAGCGACGCCATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764