Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   NLY35_RS00420 Genome accession   NZ_CP100418
Coordinates   72247..72513 (+) Length   88 a.a.
NCBI ID   WP_204101662.1    Uniprot ID   -
Organism   Streptococcus suis strain STC104     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 67247..77513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY35_RS00385 (NLY35_00385) cinA 67312..68493 (+) 1182 WP_024403265.1 competence/damage-inducible protein A Machinery gene
  NLY35_RS00390 (NLY35_00390) recA 68545..69696 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  NLY35_RS00395 (NLY35_00395) spx 69932..70330 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  NLY35_RS00400 (NLY35_00400) - 70430..70696 (+) 267 WP_024403264.1 IreB family regulatory phosphoprotein -
  NLY35_RS00405 (NLY35_00405) ruvX 70696..71115 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  NLY35_RS00410 (NLY35_00410) - 71127..71447 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  NLY35_RS00415 (NLY35_00415) - 71605..72173 (+) 569 Protein_62 nucleotidyltransferase family protein -
  NLY35_RS00420 (NLY35_00420) comX/sigX 72247..72513 (+) 267 WP_204101662.1 transcriptional regulator Regulator
  NLY35_RS00425 (NLY35_00425) rpsJ 72836..73144 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  NLY35_RS00430 (NLY35_00430) rplC 73357..73983 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  NLY35_RS00435 (NLY35_00435) rplD 74008..74631 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  NLY35_RS00440 (NLY35_00440) - 74631..74930 (+) 300 WP_024417857.1 50S ribosomal protein L23 -
  NLY35_RS00445 (NLY35_00445) rplB 74948..75781 (+) 834 WP_002936663.1 50S ribosomal protein L2 -
  NLY35_RS00450 (NLY35_00450) rpsS 75883..76164 (+) 282 WP_000533766.1 30S ribosomal protein S19 -
  NLY35_RS00455 (NLY35_00455) rplV 76182..76526 (+) 345 WP_002936662.1 50S ribosomal protein L22 -
  NLY35_RS00460 (NLY35_00460) rpsC 76539..77192 (+) 654 WP_002936661.1 30S ribosomal protein S3 -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10687.49 Da        Isoelectric Point: 9.1949

>NTDB_id=704947 NLY35_RS00420 WP_204101662.1 72247..72513(+) (comX/sigX) [Streptococcus suis strain STC104]
MEFETVCLKVRNLGRLYCYFKVKFRNHIEAIIRKQESQKCKFDRLLHEDIHGLIQSPSLGNDELLMLWGLLRDYRKNLIN
DRFENMKN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=704947 NLY35_RS00420 WP_204101662.1 72247..72513(+) (comX/sigX) [Streptococcus suis strain STC104]
ATGGAATTTGAAACGGTTTGTTTGAAGGTTAGAAACTTAGGTAGGCTATATTGCTACTTCAAAGTTAAATTTAGAAACCA
TATCGAGGCTATAATTCGTAAACAGGAAAGTCAAAAATGTAAATTTGATCGTCTCCTCCATGAAGATATTCATGGTTTGA
TTCAATCACCGAGCTTGGGTAATGATGAGTTGCTGATGTTATGGGGGCTCCTGAGAGATTATCGAAAAAATTTAATCAAT
GACCGATTTGAAAATATGAAAAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

72.603

82.955

0.602
  comX/sigX Streptococcus suis isolate S10

71.233

82.955

0.591
  comX/sigX Streptococcus suis P1/7

71.233

82.955

0.591
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.506

92.045

0.364
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

39.506

92.045

0.364