Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PDI73_RS03280 Genome accession   NZ_CP115479
Coordinates   688908..689588 (+) Length   226 a.a.
NCBI ID   WP_021722532.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 683908..694588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS03260 (PDI73_03260) - 684272..684787 (+) 516 WP_058203693.1 DUF2127 domain-containing protein -
  PDI73_RS03265 (PDI73_03265) - 684791..686116 (+) 1326 WP_033900236.1 HAMP domain-containing sensor histidine kinase -
  PDI73_RS03270 (PDI73_03270) - 686123..686779 (+) 657 WP_033900233.1 phosphatase PAP2 family protein -
  PDI73_RS03275 (PDI73_03275) glmS 686960..688777 (+) 1818 WP_010905678.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  PDI73_RS03280 (PDI73_03280) radC 688908..689588 (+) 681 WP_021722532.1 DNA repair protein RadC Machinery gene
  PDI73_RS03285 (PDI73_03285) - 689675..690325 (-) 651 WP_277730397.1 redox-sensing transcriptional repressor Rex -
  PDI73_RS03290 (PDI73_03290) - 690550..690942 (+) 393 WP_033900228.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  PDI73_RS03295 (PDI73_03295) - 691120..693027 (+) 1908 WP_129881580.1 ABC-F family ATP-binding cassette domain-containing protein -
  PDI73_RS03300 (PDI73_03300) - 693300..694058 (+) 759 WP_277730398.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25871.68 Da        Isoelectric Point: 7.4317

>NTDB_id=704776 PDI73_RS03280 WP_021722532.1 688908..689588(+) (radC) [Lactococcus lactis strain EP2]
MYELRENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLRPSQADKIFTDKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=704776 PDI73_RS03280 WP_021722532.1 688908..689588(+) (radC) [Lactococcus lactis strain EP2]
ATGTATGAACTAAGAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGAATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAGTATGGCCTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTACGACCCAGTCAGGCTGA
TAAAATATTTACTGACAAAATAAAAAAATCTTGTGAGGATGTGGGGATCAATTTTATTGACCATATTATTGTAGGGGCTG
GTAATTATTTTAGTTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-80)

RadC-like JAB domain (RadC)

(115-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.495

98.23

0.447
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.09

98.23

0.394