Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NFC98_RS10445 Genome accession   NZ_CP100360
Coordinates   2247875..2248156 (+) Length   93 a.a.
NCBI ID   WP_254274925.1    Uniprot ID   -
Organism   Halomonas sp. 3H     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2242875..2253156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC98_RS10415 - 2244231..2244611 (-) 381 WP_254274922.1 protein YgfX -
  NFC98_RS10420 - 2244592..2244885 (-) 294 WP_183329343.1 succinate dehydrogenase assembly factor 2 -
  NFC98_RS10425 - 2245072..2245383 (+) 312 WP_302055109.1 integration host factor subunit beta -
  NFC98_RS10430 - 2245429..2245734 (+) 306 WP_183329345.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  NFC98_RS10435 lapB 2245736..2246917 (+) 1182 WP_254274923.1 lipopolysaccharide assembly protein LapB -
  NFC98_RS10440 pyrF 2246925..2247620 (-) 696 WP_254274924.1 orotidine-5'-phosphate decarboxylase -
  NFC98_RS10445 comEA 2247875..2248156 (+) 282 WP_254274925.1 ComEA family DNA-binding protein Machinery gene
  NFC98_RS10450 - 2248223..2248984 (-) 762 WP_254274926.1 SDR family oxidoreductase -
  NFC98_RS10455 - 2249219..2249755 (+) 537 WP_254274927.1 FxsA family protein -
  NFC98_RS10460 - 2249977..2250270 (+) 294 WP_183329351.1 co-chaperone GroES -
  NFC98_RS10465 groL 2250363..2252006 (+) 1644 WP_254274928.1 chaperonin GroEL -
  NFC98_RS10470 - 2252121..2252861 (+) 741 WP_254274929.1 RNA methyltransferase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 9611.91 Da        Isoelectric Point: 3.7178

>NTDB_id=704757 NFC98_RS10445 WP_254274925.1 2247875..2248156(+) (comEA) [Halomonas sp. 3H]
MKTTLQGTLAATLFALMLMLSPLAATAQEVAPIDVNTADAELLAELPGIGPAKATAIIEDREANGPFENADDLTRVSGIG
EGTVANLQDQVTF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=704757 NFC98_RS10445 WP_254274925.1 2247875..2248156(+) (comEA) [Halomonas sp. 3H]
ATGAAAACAACCCTGCAGGGAACCCTCGCCGCAACGCTTTTCGCGCTGATGCTGATGCTCTCCCCGCTGGCCGCCACGGC
CCAGGAGGTCGCACCGATCGACGTCAATACCGCGGACGCTGAACTGCTCGCCGAACTGCCAGGCATCGGGCCCGCCAAGG
CCACGGCGATCATCGAGGATCGCGAAGCCAACGGCCCCTTCGAGAATGCCGACGACCTCACGCGGGTCAGCGGCATCGGC
GAAGGGACGGTGGCCAACCTTCAGGATCAGGTGACCTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

52.273

94.624

0.495
  comEA Vibrio cholerae strain A1552

52.273

94.624

0.495
  comE Neisseria gonorrhoeae MS11

43.82

95.699

0.419
  comE Neisseria gonorrhoeae MS11

43.82

95.699

0.419
  comE Neisseria gonorrhoeae MS11

43.82

95.699

0.419
  comE Neisseria gonorrhoeae MS11

43.82

95.699

0.419