Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NFC98_RS01315 Genome accession   NZ_CP100360
Coordinates   259718..260341 (+) Length   207 a.a.
NCBI ID   WP_302055087.1    Uniprot ID   -
Organism   Halomonas sp. 3H     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 254718..265341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC98_RS01300 rplQ 254774..255166 (+) 393 WP_183332902.1 50S ribosomal protein L17 -
  NFC98_RS01305 uvrA 255227..258079 (-) 2853 WP_254276420.1 excinuclease ABC subunit UvrA -
  NFC98_RS01310 - 258242..259633 (+) 1392 WP_254276421.1 MFS transporter -
  NFC98_RS01315 ssb 259718..260341 (+) 624 WP_302055087.1 single-stranded DNA-binding protein Machinery gene
  NFC98_RS01320 - 260388..261281 (+) 894 WP_254276422.1 sugar nucleotide-binding protein -
  NFC98_RS01325 - 261278..262039 (+) 762 WP_254276423.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NFC98_RS01330 fabB 262113..263330 (-) 1218 WP_254276424.1 beta-ketoacyl-ACP synthase I -
  NFC98_RS01335 fabA 263344..263859 (-) 516 WP_183332890.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  NFC98_RS01340 - 264022..264564 (-) 543 WP_254276425.1 DUF2878 family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22142.26 Da        Isoelectric Point: 5.2423

>NTDB_id=704744 NFC98_RS01315 WP_302055087.1 259718..260341(+) (ssb) [Halomonas sp. 3H]
MARGVNKVILIGNLGQDPEVRFLPSGAPVANLRLATTDTWMDRQSGQRQERTEWHTLVMFNKLAEIAQQYLKKGSRIYVE
GRLQTRKWQGQDGQDRFSTEIVVNDMQMLDSRSGGDFQGGGASQGGGYGGQPQGGYGNAPQQGGGLGGGQAPQGGGFGGQ
PQRPTPQQPPAQGQQQPGQQPGRPQQGGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=704744 NFC98_RS01315 WP_302055087.1 259718..260341(+) (ssb) [Halomonas sp. 3H]
ATGGCCCGCGGCGTCAACAAGGTCATTCTCATCGGCAACCTCGGGCAGGATCCCGAGGTGCGCTTTCTGCCCTCCGGTGC
CCCGGTCGCCAACCTGCGCCTGGCCACCACCGACACCTGGATGGACCGCCAGAGCGGCCAGCGCCAGGAGCGCACCGAGT
GGCACACCCTGGTGATGTTCAACAAGCTGGCCGAGATCGCTCAGCAGTACCTCAAGAAGGGCTCGCGCATCTACGTCGAG
GGTCGCCTCCAGACCCGCAAGTGGCAGGGGCAGGACGGCCAGGACCGCTTCAGCACCGAGATCGTCGTCAACGACATGCA
GATGCTCGACTCACGCAGCGGCGGCGACTTCCAGGGCGGAGGTGCGTCCCAGGGCGGCGGCTATGGCGGCCAGCCCCAGG
GTGGCTACGGCAATGCGCCCCAGCAGGGAGGCGGCCTCGGCGGTGGCCAGGCCCCGCAGGGGGGGGGCTTCGGCGGTCAG
CCGCAGCGCCCGACCCCGCAGCAGCCGCCGGCCCAGGGGCAGCAGCAGCCGGGGCAGCAGCCGGGACGCCCCCAGCAGGG
TGGCAACTATGGCGCCCCGGACCCCGGCAGCTTCGACGACTTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.524

100

0.502
  ssb Glaesserella parasuis strain SC1401

45.673

100

0.459
  ssb Neisseria meningitidis MC58

44.608

98.551

0.44
  ssb Neisseria gonorrhoeae MS11

44.39

99.034

0.44