Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHM04_RS14010 Genome accession   NZ_CP100350
Coordinates   3207945..3208535 (+) Length   196 a.a.
NCBI ID   WP_254264386.1    Uniprot ID   A0A9J7A6A3
Organism   Gilvimarinus sp. DA14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3202945..3213535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM04_RS14000 (NHM04_14000) uvrA 3203566..3206397 (-) 2832 WP_254264384.1 excinuclease ABC subunit UvrA -
  NHM04_RS14005 (NHM04_14005) - 3206522..3207883 (+) 1362 WP_254264385.1 MFS transporter -
  NHM04_RS14010 (NHM04_14010) ssb 3207945..3208535 (+) 591 WP_254264386.1 single-stranded DNA-binding protein Machinery gene
  NHM04_RS14015 (NHM04_14015) - 3208657..3209463 (+) 807 WP_254264387.1 hypothetical protein -
  NHM04_RS14020 (NHM04_14020) - 3209503..3210867 (-) 1365 WP_254264388.1 alpha/beta fold hydrolase -
  NHM04_RS14025 (NHM04_14025) - 3211020..3211883 (+) 864 WP_254264389.1 sugar nucleotide-binding protein -
  NHM04_RS14030 (NHM04_14030) fabB 3211950..3213167 (-) 1218 WP_254264390.1 beta-ketoacyl-ACP synthase I -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20860.63 Da        Isoelectric Point: 4.7492

>NTDB_id=704705 NHM04_RS14010 WP_254264386.1 3207945..3208535(+) (ssb) [Gilvimarinus sp. DA14]
MASRGVNKVILVGNLGQDPDTKYMPSGGAVTNISVATSDQWKDKNTGQPQERTEWHRVVFFNRLAEIAGEYLRKGSKVYI
EGSLRTRKWQGQDGQDRYTTEIVASEMQMLDSRGGEGGGNFGQGNYGGGQDNYGGGQNYGGGQQNYGAPAAAAGAAAGGF
NQPQGQPNQQQAPQQPPAQPQPPAGGFDSFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=704705 NHM04_RS14010 WP_254264386.1 3207945..3208535(+) (ssb) [Gilvimarinus sp. DA14]
ATGGCATCGCGTGGCGTTAACAAAGTCATCTTGGTGGGTAATCTGGGGCAAGACCCGGATACCAAATACATGCCCTCAGG
CGGCGCCGTAACGAATATCAGTGTGGCGACGTCAGATCAGTGGAAAGACAAAAACACTGGCCAGCCACAAGAGCGCACCG
AGTGGCATCGCGTGGTCTTTTTTAATCGCCTGGCGGAAATTGCCGGTGAATATCTGCGCAAGGGCTCCAAGGTGTACATT
GAAGGTTCACTGCGTACCCGCAAGTGGCAGGGCCAGGACGGACAGGACCGCTACACCACTGAAATTGTCGCCAGCGAAAT
GCAAATGCTGGACTCTCGCGGCGGCGAAGGCGGCGGCAACTTCGGCCAGGGTAATTACGGCGGCGGCCAGGATAACTATG
GTGGTGGCCAAAATTACGGCGGTGGCCAGCAAAACTACGGCGCACCGGCGGCAGCCGCTGGTGCGGCAGCGGGCGGTTTT
AACCAGCCCCAGGGGCAGCCTAATCAGCAGCAGGCGCCCCAGCAACCACCCGCACAGCCTCAACCACCGGCCGGTGGGTT
TGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.187

100

0.561
  ssb Glaesserella parasuis strain SC1401

52.941

100

0.551
  ssb Neisseria gonorrhoeae MS11

45.128

99.49

0.449
  ssb Neisseria meningitidis MC58

44.615

99.49

0.444