Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL388_RS02075 Genome accession   NZ_AP018721
Coordinates   381957..382238 (+) Length   93 a.a.
NCBI ID   WP_126458885.1    Uniprot ID   -
Organism   Sulfuritortus calidifontis strain J1A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376957..387238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL388_RS02050 - 377828..378118 (-) 291 WP_165919093.1 type II toxin-antitoxin system VapC family toxin -
  EL388_RS02055 - 378423..379487 (+) 1065 WP_126458873.1 porin -
  EL388_RS02060 - 379677..379958 (+) 282 WP_126458876.1 ComEA family DNA-binding protein -
  EL388_RS02065 - 380149..381390 (-) 1242 WP_126458879.1 type II toxin-antitoxin system HipA family toxin -
  EL388_RS02070 - 381387..381755 (-) 369 WP_126458882.1 helix-turn-helix domain-containing protein -
  EL388_RS02075 comE 381957..382238 (+) 282 WP_126458885.1 ComEA family DNA-binding protein Machinery gene
  EL388_RS02080 rpoH 382528..383382 (-) 855 WP_126458888.1 RNA polymerase sigma factor RpoH -
  EL388_RS02085 ftsX 383471..384376 (-) 906 WP_126458891.1 permease-like cell division protein FtsX -
  EL388_RS02090 ftsE 384373..385023 (-) 651 WP_126458894.1 cell division ATP-binding protein FtsE -
  EL388_RS02095 pilA 385391..386359 (-) 969 WP_420856661.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10028.89 Da        Isoelectric Point: 10.3564

>NTDB_id=70467 EL388_RS02075 WP_126458885.1 381957..382238(+) (comE) [Sulfuritortus calidifontis strain J1A]
MKKLLFVLFLACGLASPAWAAVDINTASQSELEAVKGLGPAKARAIIEYREKHGPYRSIDDLTKVKGLGKASVAKLKHEL
AMGEVKPAEKPKK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=70467 EL388_RS02075 WP_126458885.1 381957..382238(+) (comE) [Sulfuritortus calidifontis strain J1A]
ATGAAAAAACTGCTGTTCGTCCTGTTTCTTGCTTGCGGTCTGGCCTCGCCCGCCTGGGCGGCGGTGGATATCAACACGGC
GAGCCAGTCCGAGCTGGAGGCGGTCAAGGGCCTGGGGCCTGCCAAGGCGCGGGCGATCATCGAGTATCGCGAAAAGCATG
GCCCTTACCGGAGCATCGATGACCTGACCAAGGTGAAGGGGCTGGGCAAGGCGAGCGTGGCCAAGCTGAAGCATGAGTTG
GCCATGGGCGAGGTGAAGCCGGCCGAGAAACCGAAGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.303

95.699

0.548
  comE Neisseria gonorrhoeae MS11

57.303

95.699

0.548
  comE Neisseria gonorrhoeae MS11

57.303

95.699

0.548
  comE Neisseria gonorrhoeae MS11

57.303

95.699

0.548
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.561

88.172

0.419

Multiple sequence alignment