Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL388_RS02095 Genome accession   NZ_AP018721
Coordinates   385391..386359 (-) Length   322 a.a.
NCBI ID   WP_420856661.1    Uniprot ID   -
Organism   Sulfuritortus calidifontis strain J1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380391..391359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL388_RS02070 - 381387..381755 (-) 369 WP_126458882.1 helix-turn-helix domain-containing protein -
  EL388_RS02075 comE 381957..382238 (+) 282 WP_126458885.1 ComEA family DNA-binding protein Machinery gene
  EL388_RS02080 rpoH 382528..383382 (-) 855 WP_126458888.1 RNA polymerase sigma factor RpoH -
  EL388_RS02085 ftsX 383471..384376 (-) 906 WP_126458891.1 permease-like cell division protein FtsX -
  EL388_RS02090 ftsE 384373..385023 (-) 651 WP_126458894.1 cell division ATP-binding protein FtsE -
  EL388_RS02095 pilA 385391..386359 (-) 969 WP_420856661.1 signal recognition particle-docking protein FtsY Machinery gene
  EL388_RS02100 - 386445..387815 (+) 1371 WP_126458900.1 M16 family metallopeptidase -
  EL388_RS02105 - 387943..389241 (+) 1299 WP_232019158.1 M16 family metallopeptidase -
  EL388_RS02110 rsmD 389222..389830 (+) 609 WP_126458902.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EL388_RS02115 coaD 389847..390332 (+) 486 WP_126458905.1 pantetheine-phosphate adenylyltransferase -
  EL388_RS02120 - 390351..390602 (+) 252 WP_126458908.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34482.74 Da        Isoelectric Point: 7.4718

>NTDB_id=70468 EL388_RS02095 WP_420856661.1 385391..386359(-) (pilA) [Sulfuritortus calidifontis strain J1A]
MFSFFKKDPAAGPAESTRPAASWSERLKAGLSRTRTALTQPFASLFAGHARIDEALYEELETILLSADVGVEATQHLLAA
LRARVKRDGLTEVDQLRGALKSVLTELLAPLEKPLVLSGHKPFVIMLAGVNGAGKTTTIGKLAWRFRQEGKRVMLAAGDT
FRAAAREQLEEWGARNQVEVVGGSGGDPAAVIYDAIQSATARGIDVVLADTAGRLPTQLHLMEELKKIRRVIQKAEPSAP
HEVLLVLDANIGQNALAQAQAFDEAIGVTGLVLTKLDGTAKGGVIAALAKRRPIPVRFIGVGEGLEDLQPFRVDEFVDAL
FA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=70468 EL388_RS02095 WP_420856661.1 385391..386359(-) (pilA) [Sulfuritortus calidifontis strain J1A]
GTGTTTAGTTTCTTCAAAAAAGACCCTGCCGCCGGTCCGGCCGAATCGACCAGGCCAGCCGCAAGCTGGTCCGAGCGCCT
GAAGGCGGGCCTGTCGCGCACCCGAACGGCACTGACCCAGCCCTTCGCCAGCCTGTTCGCCGGCCATGCCCGGATCGACG
AGGCGCTCTACGAGGAGCTGGAGACCATTTTGCTTTCCGCCGATGTCGGGGTCGAGGCGACGCAACACCTGCTCGCCGCC
CTGCGCGCGCGGGTCAAGCGCGATGGCCTGACCGAGGTGGACCAGCTCAGGGGCGCGCTCAAGTCGGTGCTGACCGAACT
GCTGGCCCCGCTGGAAAAGCCGCTCGTGCTTTCGGGGCACAAGCCCTTCGTCATCATGCTGGCCGGCGTCAACGGCGCCG
GCAAGACCACCACCATCGGCAAGCTGGCCTGGCGCTTCCGCCAGGAAGGCAAGCGCGTCATGCTCGCCGCCGGCGACACC
TTCCGCGCCGCCGCCCGCGAGCAGCTGGAGGAATGGGGGGCGCGCAACCAGGTCGAGGTGGTCGGTGGCTCGGGCGGCGA
CCCGGCGGCGGTGATCTATGACGCCATCCAGTCGGCCACCGCCCGCGGCATTGATGTCGTGCTGGCCGACACCGCCGGCC
GCCTGCCCACCCAGCTGCATCTGATGGAAGAGCTGAAGAAGATCCGCCGGGTGATCCAGAAGGCCGAGCCCAGCGCCCCG
CACGAGGTGCTGCTGGTGCTCGACGCCAACATCGGCCAGAACGCCCTCGCCCAGGCCCAGGCCTTCGACGAGGCCATCGG
CGTCACCGGCCTGGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGGGTGATCGCCGCCCTGGCCAAGCGCCGGCCGA
TCCCGGTCCGCTTCATCGGCGTCGGCGAGGGCCTGGAAGACCTGCAGCCGTTCCGGGTGGATGAATTCGTGGACGCTTTG
TTCGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(39-102)

SRP54-type protein, GTPase domain (SRP54)

(122-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.333

93.168

0.59

Multiple sequence alignment