Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NG812_RS02500 Genome accession   NZ_CP099987
Coordinates   504234..505238 (+) Length   334 a.a.
NCBI ID   WP_165705956.1    Uniprot ID   A0AAX3NC03
Organism   Lactococcus garvieae strain FUA009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 499234..510238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG812_RS02480 (NG812_02470) - 499622..500326 (+) 705 WP_393187224.1 Bax inhibitor-1/YccA family protein -
  NG812_RS02485 (NG812_02475) - 500379..501203 (-) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -
  NG812_RS02490 (NG812_02480) - 501560..502981 (+) 1422 WP_014024380.1 NCS2 family permease -
  NG812_RS02495 (NG812_02485) - 503058..504158 (+) 1101 WP_165705957.1 YdcF family protein -
  NG812_RS02500 (NG812_02490) coiA 504234..505238 (+) 1005 WP_165705956.1 competence protein CoiA Machinery gene
  NG812_RS02505 (NG812_02495) pepF 505222..507027 (+) 1806 WP_270252702.1 oligoendopeptidase F Regulator
  NG812_RS02510 (NG812_02500) - 507027..507710 (+) 684 WP_165705954.1 O-methyltransferase -
  NG812_RS02515 (NG812_02505) - 507808..508716 (+) 909 WP_017370843.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39908.80 Da        Isoelectric Point: 8.6117

>NTDB_id=703194 NG812_RS02500 WP_165705956.1 504234..505238(+) (coiA) [Lactococcus garvieae strain FUA009]
MLIALDKDGKTINLLDSTSINGPFYCPACKTALRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLSLYQWFKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGRDLWLKNTLSPLQKNLLYYSAERGF
YFWELDWNRKKLRLKSLIYQDLKGRPIYLTEEFDFFQESLLDLLRQPFRKGKNLSLDVPKQEELQLFVQKQLYYQVPKWL
KVQEKYYEQGRNVLDLNWKKSYWSPPGLNLLTFDFADDTRESFFQVDISLEKYYHSFYESFQLQEHERLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=703194 NG812_RS02500 WP_165705956.1 504234..505238(+) (coiA) [Lactococcus garvieae strain FUA009]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTTCTTGACAGCACTTCAATTAATGGCCCTTTTTATTGCCC
CGCCTGTAAGACGGCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCCTTACAAAATTGCG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTAGGCTTAAAACTCAGCTTATATCAGTGGTTTAAGGAAAAAGAGAAA
GTAGAGCTGGAAAAGTACGTGCCAGAGATTAAGCAAACTGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCGCCCCTCTCTTTGCAACGCTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGATATTATGTACTTTGGCTTC
AAGGGAGGGACTTGTGGCTTAAAAATACTCTATCTCCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGGAATTGGACTGGAACAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTAACGGAAGAGTTTGATTTCTTTCAAGAAAGTCTCTTAGACCTCTTACGCCAGCCCTTTCGAAAAGGAAAAAATC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTGTTTGTTCAGAAACAATTGTATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATGTGCTGGACCTTAACTGGAAAAAGAGTTACTGGAGTCCTCCGGG
CTTGAACTTGTTGACCTTTGACTTTGCCGATGATACGCGAGAAAGCTTTTTTCAAGTAGACATTTCCTTGGAAAAATATT
ACCACAGTTTCTACGAAAGTTTTCAGTTACAAGAACATGAAAGACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.534

97.605

0.503
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

40.549

98.204

0.398