Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   VCASEI_RS07495 Genome accession   NZ_AP018680
Coordinates   1568910..1569503 (-) Length   197 a.a.
NCBI ID   WP_086963196.1    Uniprot ID   -
Organism   Vibrio casei strain DSM 22364     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563910..1574503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS07480 serC 1565451..1566533 (-) 1083 WP_086963200.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  VCASEI_RS07485 - 1566697..1567959 (-) 1263 WP_086963199.1 DUF945 family protein -
  VCASEI_RS07490 - 1568282..1568839 (+) 558 WP_086963197.1 hypothetical protein -
  VCASEI_RS07495 tfoX 1568910..1569503 (-) 594 WP_086963196.1 TfoX/Sxy family DNA transformation protein Regulator
  VCASEI_RS07500 - 1569984..1570889 (+) 906 WP_086963194.1 lysine exporter LysO family protein -
  VCASEI_RS07505 - 1571020..1571541 (+) 522 WP_086963192.1 hypothetical protein -
  VCASEI_RS07510 panP 1571654..1573300 (+) 1647 WP_089110216.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  VCASEI_RS07515 - 1573643..1574497 (+) 855 WP_086963190.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22605.88 Da        Isoelectric Point: 9.4927

>NTDB_id=70319 VCASEI_RS07495 WP_086963196.1 1568910..1569503(-) (tfoX) [Vibrio casei strain DSM 22364]
MGSNLERSFFEYVTKFGSFQKRSMFGGIGLFSEDAMYALISNGTIFIRGGGDLDQSLEAKNCKRYKHVKKQTVATVNYFD
ITKLYTEGDVALDGIIEASIEYSKRERAFQKSEDSRRLRDLPNMQLTLERMVKKSGVPDVTTFLQMGPEDVFKRVKETYG
SDVDIRLLWKFAGAVDGCHWKLIQEPRRQKLLSNVHH

Nucleotide


Download         Length: 594 bp        

>NTDB_id=70319 VCASEI_RS07495 WP_086963196.1 1568910..1569503(-) (tfoX) [Vibrio casei strain DSM 22364]
ATGGGTAGTAATTTGGAGCGGTCATTTTTTGAATATGTAACTAAGTTTGGTTCATTTCAAAAACGTTCAATGTTTGGTGG
TATTGGACTGTTTAGTGAAGATGCAATGTACGCATTGATCTCGAATGGCACTATTTTTATTCGCGGTGGTGGAGATCTTG
ATCAAAGCTTAGAAGCAAAAAATTGTAAAAGATATAAGCATGTGAAGAAACAAACCGTCGCAACGGTTAACTATTTTGAT
ATTACAAAGCTCTATACAGAAGGTGATGTTGCTTTAGATGGAATTATAGAAGCATCCATTGAATACTCTAAAAGAGAAAG
AGCATTTCAGAAGTCAGAAGATAGTCGACGATTACGTGATTTACCTAACATGCAACTTACTCTAGAACGAATGGTTAAAA
AATCAGGTGTGCCAGATGTCACTACTTTTCTTCAGATGGGACCAGAGGATGTATTTAAACGAGTAAAAGAAACCTATGGT
AGTGATGTTGATATCCGTTTATTGTGGAAATTTGCAGGTGCAGTTGATGGATGCCATTGGAAACTTATTCAAGAGCCAAG
AAGGCAAAAACTTTTATCCAATGTACATCATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(115-194)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

62.5

97.462

0.609
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

62.5

97.462

0.609
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

62.5

97.462

0.609
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

62.5

97.462

0.609
  tfoX Vibrio cholerae strain A1552

62.5

97.462

0.609
  tfoX Vibrio campbellii strain DS40M4

62.234

95.431

0.594
  tfoX Vibrio parahaemolyticus RIMD 2210633

61.17

95.431

0.584
  tfoX Aliivibrio fischeri ES114

59.067

97.97

0.579

Multiple sequence alignment